Factsheet for Bra000445.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83337	Canola	cytosol	100.0	100.0
AT2G47250.1	Thale cress	nucleus	95.44	94.65
Bra007671.1-P	Field mustard	nucleus	91.15	91.78
KRH69191	Soybean	nucleus	88.66	88.78
KRH68290	Soybean	nucleus	88.11	88.47
KRG96553	Soybean	nucleus	88.11	88.35
TraesCS4A01G124200.2	Wheat	cytosol	87.69	88.18
HORVU4Hr1G052730.3	Barley	cytosol	87.55	87.79
TraesCS4D01G181700.1	Wheat	cytosol	87.55	87.79
TraesCS4B01G180200.1	Wheat	cytosol	87.55	87.79
PGSC0003DMT400023284	Potato	nucleus	87.55	87.55
VIT_07s0005g01770.t01	Wine grape	nucleus	88.11	87.5
Solyc01g079250.2.1	Tomato	nucleus	87.41	87.41
Zm00001d028923_P002	Maize	nucleus	86.45	86.69
KXG39505	Sorghum	cytosol	86.45	86.57
KRH31768	Soybean	cytosol, nucleus	66.39	83.19
Bra003744.1-P	Field mustard	nucleus	77.04	83.13
Os03t0314100-01	Rice	cytosol, nucleus, plastid	63.49	81.38
Zm00001d047601_P006	Maize	nucleus	85.34	79.82
GSMUA_Achr1P18470_001	Banana	cytosol	38.59	78.37
Bra001237.1-P	Field mustard	cytosol	38.17	63.89
Bra001238.1-P	Field mustard	cytosol, mitochondrion	22.82	62.5
Bra040328.1-P	Field mustard	cytosol, mitochondrion	14.52	49.07
Bra013313.1-P	Field mustard	nucleus	41.63	43.19
Bra011023.1-P	Field mustard	nucleus	38.87	40.78
Bra024720.1-P	Field mustard	nucleus	40.94	40.22
Bra010915.1-P	Field mustard	nucleus	37.76	38.72
Bra038498.1-P	Field mustard	nucleus	45.5	36.52
Bra010168.1-P	Field mustard	nucleus	46.61	32.28
Bra025211.1-P	Field mustard	nucleus	49.52	30.57
Bra040091.1-P	Field mustard	nucleus	27.11	24.78
Bra023387.1-P	Field mustard	nucleus	41.22	23.88
Bra023043.1-P	Field mustard	nucleus	32.09	23.32
Bra024903.1-P	Field mustard	nucleus	32.37	20.62
Bra018747.1-P	Field mustard	plastid	32.92	20.17
Bra009414.1-P	Field mustard	mitochondrion	32.09	20.09
Bra032998.1-P	Field mustard	nucleus	31.67	18.51
Bra021665.1-P	Field mustard	nucleus	29.05	16.09
Bra018293.1-P	Field mustard	plasma membrane, vacuole	29.32	16.06
Bra027890.1-P	Field mustard	nucleus	23.1	12.56
Bra009038.1-P	Field mustard	plastid	30.57	12.51
Bra006057.1-P	Field mustard	plastid	30.29	12.48

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra000445	EnsemblPlants:Bra000445.1
EnsemblPlants:Bra000445.1-P	ncoils:Coil	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4C8B7	InterPro:P-loop_NTPase
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFAM:PF13401	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
UniParc:UPI000253FF2C	SEG:seg	:	:	:	:

Description

AT2G47250 (E=0.0) | RNA helicase, putative

Coordinates

chrA03:-:11160537..11163447

Molecular Weight (calculated)

82302.9 Da

IEP (calculated)

7.360

GRAVY (calculated)

-0.420

Length

723 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVMEDPSA KNNKSNVLGA ASAAAGINKW NGKPYSQRYY DILEKRRDLP VWLQKDEFLR TLQSSQTLIL VGETGSGKTT QIPQFVLDAV
101: EAENTNKHKK WLVGCTQPRR VAAMSVSRRV ADEMDVAIGE EVGYSIRFED CSGPRTMLKY LTDGMLLREA MADPLLERYK VIILDEAHER TLATDVLFGL
201: LKEVLRNRPD LKLVVMSATL EAEKFQEYFS GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVVQIHMC EPPGDVLVFL TGEEEIEDAC RKINKEVSNL
301: GDQVGPVKVV PLYSTLPPAM QQKIFDPAPE PLTEGGPAGR KIVVSTNIAE TSLTIDGIVY VIDPGFAKQK VYNPRIRVES LLVSPISKAS AHQRSGRAGR
401: TRPGKCFRLY TEKSFNNDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDEGNL TRTGEIMSEF PLDPQMSKML
501: IVSPEFNCSN EILSVSAMLS VPNCFVRPRE AQKAADEAKS KFGHIDGDHL TLLNVYHAYK QNNEDPNWCF ENFVNNRAMK SADNVRQQLV RIMSRFNLKM
601: CSTDFNSRDY YVNIRKAMLS GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CLDHKPEWVI YNEYVLTTRN FIRTVTDIRG DWLVDVAPHY YDLSNFPNCE
701: AKRVLEKLYK KRERERNESK NRK

Best Arabidopsis Sequence Match ( AT2G47250.1 )
(BLAST)

001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.