Factsheet for Bra018293.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10756	Canola	nucleus	80.0	96.97
Bra021665.1-P	Field mustard	nucleus	80.98	81.92
AT2G30800.1	Thale cress	nucleus	79.85	81.14
VIT_12s0028g01050.t01	Wine grape	nucleus	54.55	58.49
KRH73592	Soybean	nucleus	51.14	58.09
KRH14525	Soybean	nucleus	50.61	57.39
Solyc07g044930.2.1	Tomato	nucleus	51.97	57.21
EES01523	Sorghum	nucleus	48.94	54.06
TraesCS3A01G298900.1	Wheat	nucleus	48.03	53.96
TraesCS3B01G337600.3	Wheat	nucleus	48.71	53.81
Os01t0767700-01	Rice	nucleus	49.32	53.23
GSMUA_Achr5P02110_001	Banana	mitochondrion	43.33	50.8
TraesCS3D01G302800.2	Wheat	plastid	48.79	50.55
HORVU3Hr1G074660.7	Barley	plastid	48.48	50.24
Zm00001d012661_P002	Maize	mitochondrion, plastid	48.56	49.31
Bra023043.1-P	Field mustard	nucleus	24.32	32.26
Bra001238.1-P	Field mustard	cytosol, mitochondrion	6.06	30.3
Bra003744.1-P	Field mustard	nucleus	15.38	30.3
Bra001237.1-P	Field mustard	cytosol	9.7	29.63
Bra040328.1-P	Field mustard	cytosol, mitochondrion	4.77	29.44
Bra000445.1-P	Field mustard	cytosol	16.06	29.32
Bra024903.1-P	Field mustard	nucleus	24.85	28.9
Bra007671.1-P	Field mustard	nucleus	15.61	28.69
Bra018747.1-P	Field mustard	plastid	25.08	28.05
Bra013313.1-P	Field mustard	nucleus	14.7	27.83
Bra011023.1-P	Field mustard	nucleus	14.47	27.72
Bra010915.1-P	Field mustard	nucleus	14.77	27.66
Bra009414.1-P	Field mustard	mitochondrion	23.86	27.27
Bra024720.1-P	Field mustard	nucleus	14.47	25.95
Bra038498.1-P	Field mustard	nucleus	16.14	23.64
Bra010168.1-P	Field mustard	nucleus	16.06	20.31
Bra025211.1-P	Field mustard	nucleus	16.29	18.36
Bra027890.1-P	Field mustard	nucleus	18.18	18.05
Bra023387.1-P	Field mustard	nucleus	16.74	17.71
Bra032998.1-P	Field mustard	nucleus	14.7	15.68
Bra040091.1-P	Field mustard	nucleus	9.39	15.68
Bra006057.1-P	Field mustard	plastid	16.36	12.31
Bra009038.1-P	Field mustard	plastid	15.98	11.94

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:1.25.40.20	Gene3D:3.30.1370.50	Gene3D:3.40.50.300	MapMan:35.1	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:Bra018293	EnsemblPlants:Bra018293.1	EnsemblPlants:Bra018293.1-P	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001374
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR020683	InterPro:IPR036770	InterPro:IPR036867	UniProt:M4DP53
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF01424	PFAM:PF04408	PFAM:PF07717
PFscan:PS50297	PFscan:PS51061	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF100
InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF48403
SUPFAM:SSF52540	SUPFAM:SSF82708	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002547ABD	SEG:seg

Description

AT2G30800 (E=0.0) HVT1, ATVT-1 | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM); ATP binding / helicase/ nucleic acid binding

Coordinates

chrA05:+:7248696..7261197

Molecular Weight (calculated)

145973.0 Da

IEP (calculated)

8.108

GRAVY (calculated)

-0.388

Length

1320 amino acids

Sequence
(BLAST)

0001: MASKALFLLG FFTLFLLVSE VVGASESQSG TVKLGSEETI QSGDGGRGGY NGERNGVDKE GPINVGYNRK GQWGYRYSGC HHGCCLQIIG CYKCCPKLYT
0101: STFIVFLPAY TFEHNLSNSE RRVIHLMCRK MGLRSKSSGR GDQRCLSIYK RSHKNGWKSN REKLRCVSFP PGADAILQDL FTHYPPCDGD AAETSFNKYV
0201: GRSGKQGRWR DDDFFRKPQI SCDEIVEKAA SLSSRLRKDK ALQEISKLRS KLPIASFRDA ITSAVESNQV ILISGETGCG KTTQVPQYLL DHMWSAKKET
0301: CKIVCTQPRR ISAMSVSERI SCERGESIGD NIGYKVRLQS KGGRRSSVVF CTNGILLRVL VGKGSVSYVS DITHIIVDEI HERDCYSDFM LAIIRDLLPS
0401: NPHLRLILMS ATLDAERFSG YFGGCPVVRV PGFTYPVRSL YLEDVLSILK SGGDNNNLCS TNLSIPVQNL TDEDKLALDE AIILAWTNDE FDALLDLVSS
0501: QGSPQVFNYQ HQSTGLTPLM VFAGKGRISD VCMLLSFGAD SILKSKDGMT ALELAEAENQ PEAAQIIREH AENSQSNSQQ AQQLLDKYMA TINPEQVDVS
0601: LILQLVRKIC GDSEDCGGAV LVFLPGWDDI NKTRQRLLDS PFFKDSSKFD IICLHSMVPA GEQKKVFSRP PRGCRKIVLA TNIAESAVTI DDVVYVIDSG
0701: RMKEKSYDPH NNVSTLQSSW VSKANAKQRE GRAGRCQPGI CYHLYSRLRA ASMPDFKVPE IKRMPVEELC LQVKILDPNC KANDFLQKLL DPPVDQSIAN
0801: ALSILQNIGA LTPEEELTEL GEKFGHLPVH PLISKMLFFA VLVNCLDPAL TLACAADYKE PFTMPMSPVE RQKAAAAKLE LASLCGGDSD HLAVVAAFEC
0901: WKNAKEKGLL AEFCSQYFVS PSAMKMLDQM RSQLESELKR HGIIPSDISS CSQNSSDPGI LRAVLAVGLY PMVGRLCPSF GKNRRSIVET ASGAKVRVHS
1001: LSNNFNLSSR EYDESLVVFD EITRGDGGMH IRNCTVARDL PLLLISTEIA VAPIESSDVD DSEEEEEEEE GDSSNEERIN INKVESRGGE KVMSSPENSV
1101: KLVVDRWLPF KTTALEGAPM YILRERLTAS ILFKVRHPRE NLPPHLGASM HAIACILSYD GHAGLSSKHS KTEMYETGGR EEKPNSFLSS LFWSPSLKET
1201: KPSSRKRKRN RQHGFNTAPT EASSMPRQQS NNQRKPESAN SLVSGNKKEN KPSDQVCGNQ QPNTAPREAA VSIAKNQSSK KSKTRSGNKS DSGKKKGVDV
1301: PKIDLHKMQR EEKTKLKGNS

Best Arabidopsis Sequence Match ( AT2G30800.1 )
(BLAST)

0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK

Arabidopsis Description

HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.