Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34159 | Canola | nucleus | 99.43 | 99.43 |
| CDY48353 | Canola | nucleus | 94.99 | 96.08 |
| AT1G33390.2 | Thale cress | nucleus | 75.51 | 75.51 |
| VIT_07s0005g00860.t01 | Wine grape | nucleus | 54.24 | 50.79 |
| Solyc01g095710.2.1 | Tomato | nucleus | 52.14 | 48.1 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 41.79 | 48.09 |
| PGSC0003DMT400000297 | Potato | nucleus | 51.9 | 48.05 |
| KRH76262 | Soybean | nucleus | 50.12 | 46.93 |
| KRH65271 | Soybean | nucleus | 49.96 | 46.75 |
| Os02t0736600-01 | Rice | nucleus | 47.7 | 46.38 |
| KXG30805 | Sorghum | nucleus | 47.21 | 45.77 |
| Zm00001d017967_P003 | Maize | nucleus | 46.65 | 45.11 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 46.32 | 44.52 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 46.0 | 44.25 |
| TraesCS6A01G178200.1 | Wheat | nucleus | 43.25 | 43.53 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 46.16 | 43.06 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 46.16 | 43.06 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 45.84 | 42.99 |
| Bra001237.1-P | Field mustard | cytosol | 13.18 | 37.73 |
| Bra001238.1-P | Field mustard | cytosol, mitochondrion | 7.52 | 35.23 |
| Bra003744.1-P | Field mustard | nucleus | 18.84 | 34.78 |
| Bra011023.1-P | Field mustard | nucleus | 18.84 | 33.82 |
| Bra040328.1-P | Field mustard | cytosol, mitochondrion | 5.74 | 33.18 |
| Bra007671.1-P | Field mustard | nucleus | 18.76 | 32.31 |
| Bra000445.1-P | Field mustard | cytosol | 18.51 | 31.67 |
| Bra010915.1-P | Field mustard | nucleus | 17.87 | 31.35 |
| Bra013313.1-P | Field mustard | nucleus | 17.06 | 30.27 |
| Bra024720.1-P | Field mustard | nucleus | 17.95 | 30.16 |
| Bra038498.1-P | Field mustard | nucleus | 20.78 | 28.52 |
| Bra010168.1-P | Field mustard | nucleus | 21.26 | 25.19 |
| Bra025211.1-P | Field mustard | nucleus | 21.26 | 22.46 |
| Bra023387.1-P | Field mustard | nucleus | 20.94 | 20.75 |
| Bra023043.1-P | Field mustard | nucleus | 16.57 | 20.6 |
| Bra024903.1-P | Field mustard | nucleus | 17.87 | 19.47 |
| Bra018747.1-P | Field mustard | plastid | 18.27 | 19.15 |
| Bra040091.1-P | Field mustard | nucleus | 11.8 | 18.46 |
| Bra009414.1-P | Field mustard | mitochondrion | 17.06 | 18.27 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 15.68 | 14.7 |
| Bra021665.1-P | Field mustard | nucleus | 15.28 | 14.48 |
| Bra027890.1-P | Field mustard | nucleus | 13.9 | 12.93 |
| Bra006057.1-P | Field mustard | plastid | 18.11 | 12.76 |
| Bra009038.1-P | Field mustard | plastid | 17.46 | 12.22 |
| Os02t0736800-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | EnsemblPlantsGene:Bra032998 | EnsemblPlants:Bra032998.1 | EnsemblPlants:Bra032998.1-P |
| ncoils:Coil | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M4EW15 | InterPro:P-loop_NTPase | PFAM:PF00271 |
| PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 |
| PANTHER:PTHR18934:SF99 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI00025455E9 |
| SEG:seg | : | : | : | : | : |
Description
AT1G33390 (E=0.0) | helicase domain-containing protein
Coordinates
chrA02:+:21998826..22003125
Molecular Weight (calculated)
139865.0 Da
IEP (calculated)
5.710
GRAVY (calculated)
-0.646
Length
1237 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKGEDSNLDI MPPRKKKNTG PNKMSDKLNL KKTTLSKSQK RKLKKIEEEK ERELLSAKTA ELLDKYKISE DVSLLLQSSK AIGRSDTKLE KRRRPMQLSK
0101: AGVLSDEPVK ENDDSDSFMD DEPTTPENHL PTLQTDSEQL THANEVMISA EEVHEEDETK VREEDETMFK NLQTTRRDDD DEEEGLQRMD ESEDVTLKGP
0201: AFVVHVSRPA EVEETRKELP IIMMEQEIME AINYHPTVII SGKTGCGKTT QVPQFLYEAG FGSKQVSSRS GVIGITQPRR VAGLAPPQRG AHELGVRLGQ
0301: EVGFQVRYDK KIGENSAIKF MTDGILVREI KDDLLLKRYS VIILDEAHER SLNTDILIGM LTRSIKMRQE LYRDQQKHLQ NGGTIASKDV IWPLKLILMS
0401: ATLRVEDFVS GQRLFPKPPP VIEVPTRQYP VTIHFSKRTD EFNYMGEAYK KVMSIHKKLP QGGILVFVTG QREVENLCEK LRKSSKELVA QAARRDASEK
0501: EKKLEDDADG SFGGVDMKEI AEAFDDASNT QDYKFNSFGE DPYETGNGEH DDFDEENMYE SDEESDWETI DDDGGLASSL EEDGKKVDAL RAAFKALADK
0601: KGSESTETTT TSTEAEEEEE KKPFTPGKLR VLPLYAMLSP DAQLRVFAEV EEGERLVVVA TNVAETSLTI PGIKYVVDTG RAKAKSYDIK TGMDAYEVDW
0701: ISQASASQRA GRAGRTGPGH CYRLYSSTVF SNTFEESSPP EITRVPIDGV VLQLKSMNIP KVENFPFPTP PEPSSIKQSE RCLKALEALD SDGRLTQLGN
0801: AMSNYPMSPR HSRMLLTVIQ MLKEATNYSR ANLVLAYAVA AAAALSLENP LIMQFGEEKQ NEDHEDDKQR KKDRKDKIKA ARDRFSNPSS DALTVAYVLH
0901: SYEVAEDGPG LFCETNGLNM KTMNEMSKLK ADLLRLVFRS SETENLYKWT HGTIQDVEES WRNAASSKTP LLQKEEELLG EAICAGWADR VARKTKSTQY
1001: QACAVQEEPV YLHRWSSLIN SAPELLVYSE LLRTNKPYMH GATRVKPEWL VKHAKSLCVF STPLKDPKPY YSRELDRVFC WVVPSFGPHL WELPAHSEAI
1101: SDDMYRAAVF GYALLRGEVL PCLKSARALM AGKPETLLER EGWGLERVGS LLKALNEKKI DSLGSLRKRW EQNPNVLYPE IEAWFQKKCR HHVKELWQRM
1201: LQEAKVNVPG KLKRSSVIPI ERSDEKLKRP RAKVCFE
0101: AGVLSDEPVK ENDDSDSFMD DEPTTPENHL PTLQTDSEQL THANEVMISA EEVHEEDETK VREEDETMFK NLQTTRRDDD DEEEGLQRMD ESEDVTLKGP
0201: AFVVHVSRPA EVEETRKELP IIMMEQEIME AINYHPTVII SGKTGCGKTT QVPQFLYEAG FGSKQVSSRS GVIGITQPRR VAGLAPPQRG AHELGVRLGQ
0301: EVGFQVRYDK KIGENSAIKF MTDGILVREI KDDLLLKRYS VIILDEAHER SLNTDILIGM LTRSIKMRQE LYRDQQKHLQ NGGTIASKDV IWPLKLILMS
0401: ATLRVEDFVS GQRLFPKPPP VIEVPTRQYP VTIHFSKRTD EFNYMGEAYK KVMSIHKKLP QGGILVFVTG QREVENLCEK LRKSSKELVA QAARRDASEK
0501: EKKLEDDADG SFGGVDMKEI AEAFDDASNT QDYKFNSFGE DPYETGNGEH DDFDEENMYE SDEESDWETI DDDGGLASSL EEDGKKVDAL RAAFKALADK
0601: KGSESTETTT TSTEAEEEEE KKPFTPGKLR VLPLYAMLSP DAQLRVFAEV EEGERLVVVA TNVAETSLTI PGIKYVVDTG RAKAKSYDIK TGMDAYEVDW
0701: ISQASASQRA GRAGRTGPGH CYRLYSSTVF SNTFEESSPP EITRVPIDGV VLQLKSMNIP KVENFPFPTP PEPSSIKQSE RCLKALEALD SDGRLTQLGN
0801: AMSNYPMSPR HSRMLLTVIQ MLKEATNYSR ANLVLAYAVA AAAALSLENP LIMQFGEEKQ NEDHEDDKQR KKDRKDKIKA ARDRFSNPSS DALTVAYVLH
0901: SYEVAEDGPG LFCETNGLNM KTMNEMSKLK ADLLRLVFRS SETENLYKWT HGTIQDVEES WRNAASSKTP LLQKEEELLG EAICAGWADR VARKTKSTQY
1001: QACAVQEEPV YLHRWSSLIN SAPELLVYSE LLRTNKPYMH GATRVKPEWL VKHAKSLCVF STPLKDPKPY YSRELDRVFC WVVPSFGPHL WELPAHSEAI
1101: SDDMYRAAVF GYALLRGEVL PCLKSARALM AGKPETLLER EGWGLERVGS LLKALNEKKI DSLGSLRKRW EQNPNVLYPE IEAWFQKKCR HHVKELWQRM
1201: LQEAKVNVPG KLKRSSVIPI ERSDEKLKRP RAKVCFE
0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
Arabidopsis Description
FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.