Factsheet for Bra040328.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37024	Canola	cytosol, mitochondrion	99.53	65.74
Os08t0335000-00	Rice	cytosol, nucleus	57.94	33.79
GSMUA_Achr4P23370_001	Banana	nucleus	70.09	20.0
Bra010168.1-P	Field mustard	nucleus	92.99	19.06
Zm00001d049980_P001	Maize	plasma membrane	61.68	18.91
AT1G32490.1	Thale cress	cytosol	90.65	18.58
KXG30390	Sorghum	nucleus	80.84	16.54
EES02741	Sorghum	nucleus	79.44	16.25
TraesCS4D01G362600.1	Wheat	nucleus	78.5	16.06
TraesCS4B01G374800.1	Wheat	nucleus	78.5	16.06
Bra003744.1-P	Field mustard	nucleus	49.53	15.82
Bra038498.1-P	Field mustard	nucleus	65.89	15.65
HORVU4Hr1G088270.17	Barley	mitochondrion	78.5	15.56
Bra001238.1-P	Field mustard	cytosol, mitochondrion	19.16	15.53
Bra007671.1-P	Field mustard	nucleus	49.53	14.76
Bra000445.1-P	Field mustard	cytosol	49.07	14.52
Bra013313.1-P	Field mustard	nucleus	45.79	14.06
Bra011023.1-P	Field mustard	nucleus	40.65	12.63
Bra010915.1-P	Field mustard	nucleus	40.19	12.2
Bra024720.1-P	Field mustard	nucleus	40.19	11.68
Bra040091.1-P	Field mustard	nucleus	38.78	10.49
Bra001237.1-P	Field mustard	cytosol	20.09	9.95
Bra025211.1-P	Field mustard	nucleus	50.93	9.31
Bra023387.1-P	Field mustard	nucleus	46.26	7.93
Bra023043.1-P	Field mustard	nucleus	34.11	7.34
Bra024903.1-P	Field mustard	nucleus	33.64	6.34
Bra018747.1-P	Field mustard	plastid	33.18	6.02
Bra009414.1-P	Field mustard	mitochondrion	31.31	5.8
Bra032998.1-P	Field mustard	nucleus	33.18	5.74
Bra021665.1-P	Field mustard	nucleus	29.44	4.83
Bra018293.1-P	Field mustard	plasma membrane, vacuole	29.44	4.77
Bra009038.1-P	Field mustard	plastid	34.58	4.19
Bra006057.1-P	Field mustard	plastid	34.11	4.16
Bra027890.1-P	Field mustard	nucleus	19.63	3.16

Protein Annotations

EnsemblPlants:Bra040328.1	EnsemblPlants:Bra040328.1-P	EnsemblPlantsGene:Bra040328	Gene3D:1.20.120.1080	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR18934	PANTHER:PTHR18934:SF117	PFAM:PF04408
SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0002544255	UniProt:M4FGV0	MapMan:35.1	:

Description

AT1G32490 (E=1e-065) EMB2733, ESP3 | ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding

Coordinates

chrA04:+:18471878..18472601

Molecular Weight (calculated)

24305.2 Da

IEP (calculated)

9.559

GRAVY (calculated)

-0.417

Length

214 amino acids

Sequence
(BLAST)

001: MLKLHREFSM KYVVDPGFSK MKSYNPRTGM ESLLFTPISK ASATQRAGRA GRTSAGKCYR LYTAFNYKND LEESTVPEVQ RTNLASVVGE LTKAGRRMAE
101: FPLDPMLSKM IVVSDKYKCS DEVISIAAML SVGGSVFYRP KDKQVHADNA RMNFHVGNVG DHIALLKVYS SWKETNYSTQ WCYENYVQVR SMKRASDIRE
201: QLEGLVERVE IEIS

Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.