Factsheet for Os08t0335000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040328.1-P	Field mustard	cytosol, mitochondrion	33.79	57.94
Zm00001d049980_P001	Maize	plasma membrane	91.28	47.99
KRH40933	Soybean	cytosol	68.39	41.22
CDY37024	Canola	cytosol, mitochondrion	35.42	40.12
Os02t0301500-01	Rice	nucleus	58.31	39.19
GSMUA_Achr4P23370_001	Banana	nucleus	79.56	38.93
KRH12910	Soybean	cytosol, nucleus	76.84	37.85
Solyc03g115390.2.1	Tomato	nucleus	87.19	35.2
PGSC0003DMT400005723	Potato	nucleus	77.66	34.67
Os03t0314100-01	Rice	cytosol, nucleus, plastid	52.86	34.4
Os06t0192500-02	Rice	mitochondrion	36.78	33.09
KRH69386	Soybean	cytosol	23.71	33.08
KXG30390	Sorghum	nucleus	94.28	33.08
EES02741	Sorghum	nucleus	93.73	32.89
TraesCS4D01G362600.1	Wheat	nucleus	92.92	32.6
TraesCS4B01G374800.1	Wheat	nucleus	92.92	32.6
Solyc12g017700.1.1	Tomato	nucleus	77.38	32.05
AT4G16680.2	Thale cress	nucleus	69.48	32.04
HORVU4Hr1G088270.17	Barley	mitochondrion	92.37	31.39
KRH54662	Soybean	nucleus	87.74	30.78
PGSC0003DMT400063370	Potato	nucleus	87.19	30.48
VIT_17s0000g06950.t01	Wine grape	nucleus	87.47	30.46
AT1G32490.1	Thale cress	cytosol	81.74	28.74
Bra010168.1-P	Field mustard	nucleus	81.74	28.74
CDY32278	Canola	endoplasmic reticulum	81.47	28.64
CDY26898	Canola	nucleus	81.47	28.64
CDY40514	Canola	nucleus	66.76	28.46
CDY60185	Canola	nucleus	66.48	28.41
KRH74752	Soybean	nucleus	78.2	27.81
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	79.02	27.78
Bra038498.1-P	Field mustard	nucleus	66.48	27.08
Os05t0389800-01	Rice	nucleus	76.29	26.17
Os01t0212100-01	Rice	nucleus	46.87	24.57
Os11t0310800-01	Rice	nucleus	40.87	21.19
Os06t0343100-01	Rice	nucleus	56.95	19.28
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	35.42	15.89
Os07t0508000-01	Rice	nucleus	50.95	14.61
Os10t0471350-01	Rice	nucleus	36.78	13.53
Os02t0736600-01	Rice	nucleus	39.51	11.4
Os03t0748800-01	Rice	mitochondrion	35.69	11.39
Os01t0767700-01	Rice	nucleus	31.06	9.32
Os07t0621500-01	Rice	cytosol, nucleus	28.61	8.16
Os04t0432200-00	Rice	extracellular	0.0	0.0
Os02t0736800-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0XER6	ProteinID:BAT04960.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004386	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os08g0335000	EnsemblPlants:Os08t0335000-00	InterPro:P-loop_NTPase	PFAM:PF00271
PFAM:PF04408	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF117	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI000393A784	:	:	:

Description

Similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase. (Os08t0335000-00)

Coordinates

chr8:-:14981455..14985306

Molecular Weight (calculated)

40771.3 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.166

Length

367 amino acids

Sequence
(BLAST)

001: TLSTDILFGL VKDISRFRPD LKLLISSATL DAEKFSDYFD SAPIFKIPGR RYPVEVHYTK APEADYIDAA IVTVLQIHVT QPPGDILVFL TGQEEIETID
101: EILKHRTRGL GTKIAELLIC PIYANLPTEL QAKIFEPTPE GARKVVLATN IAETSLTIDG IKYVVDPGFC KIKSYNPRTG MESLLINPIS KASANQRAGR
201: SGRTGPGKCF RLYTSYNYMH DLEDNTVPEI QRTNLANVVL TLKSLGIHDL VNFDFMDPPP SEALLKALEQ LFALSALNSR GELTKTGRRM AEFPLDPMLS
301: KMIVASEKYK CSDEVISIAS MLSVGNSIFY RPKDKQVHAD NARFTTHGKK QTIQHSGAMK TIYRSAA

Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.