Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G039880.1 | Barley | nucleus | 86.27 | 91.11 |
| Zm00001d045376_P001 | Maize | cytosol | 30.06 | 90.91 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 39.88 | 87.47 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 90.18 | 87.46 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 90.18 | 87.46 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 90.28 | 87.39 |
| Zm00001d019056_P001 | Maize | nucleus | 17.03 | 85.0 |
| Zm00001d032735_P001 | Maize | plastid | 87.88 | 84.82 |
| KXG38358 | Sorghum | nucleus | 87.27 | 84.07 |
| PGSC0003DMT400055058 | Potato | nucleus | 65.63 | 76.7 |
| KRH72171 | Soybean | nucleus | 66.43 | 73.67 |
| VIT_08s0032g01230.t01 | Wine grape | nucleus, plastid | 75.25 | 73.27 |
| Solyc01g006970.2.1 | Tomato | nucleus | 75.35 | 72.94 |
| Bra023043.1-P | Field mustard | nucleus | 72.55 | 72.76 |
| KRH32860 | Soybean | mitochondrion, nucleus, plastid | 73.75 | 71.46 |
| CDX79642 | Canola | nucleus, vacuole | 72.65 | 70.05 |
| CDX84588 | Canola | plastid, vacuole | 72.44 | 69.86 |
| AT2G35920.3 | Thale cress | plastid | 71.34 | 69.33 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 36.77 | 66.49 |
| Os01t0118100-01 | Rice | cytosol, mitochondrion, nucleus | 34.87 | 42.54 |
| Os03t0748800-01 | Rice | mitochondrion | 45.79 | 39.74 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 21.14 | 37.41 |
| Os08t0335000-00 | Rice | cytosol, nucleus | 13.53 | 36.78 |
| Os02t0301500-01 | Rice | nucleus | 18.94 | 34.62 |
| Os01t0212100-01 | Rice | nucleus | 22.44 | 32.0 |
| Os06t0192500-02 | Rice | mitochondrion | 12.63 | 30.88 |
| Os11t0310800-01 | Rice | nucleus | 21.74 | 30.65 |
| Os01t0767700-01 | Rice | nucleus | 32.97 | 26.9 |
| Os06t0343100-01 | Rice | nucleus | 26.35 | 24.26 |
| Os05t0389800-01 | Rice | nucleus | 24.55 | 22.9 |
| Os04t0432200-00 | Rice | extracellular | 1.6 | 21.92 |
| Os07t0508000-01 | Rice | nucleus | 24.65 | 19.22 |
| Os02t0736600-01 | Rice | nucleus | 21.34 | 16.75 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 13.93 | 10.8 |
| Os02t0736800-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A0P0XV93 | ProteinID:BAT11260.1 | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | EnsemblPlantsGene:Os10g0471350 | EnsemblPlants:Os10t0471350-01 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF191 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0003939B96 | SEG:seg | : | : | : |
Description
Similar to helicase domain-containing protein. (Os10t0471350-01)
Coordinates
chr10:-:17475528..17484166
Molecular Weight (calculated)
111387.0 Da
IEP (calculated)
8.563
GRAVY (calculated)
-0.350
Length
998 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYRGGGGGR RGGGGGPNSQ RGRGRGGGGA GRGGGGGGRG GGGRGEQRWW DPQWRAERLR QMAGEVEKVD ENEWWNKIRQ LREGSQQELV VKRNFGRDGQ
101: NILADMAQRQ GLYFNVYNKG KTIVFSKVPL PDYRADLDER HGSTQQEIRM SNETERRVES LLAKAKSNSN DSASTSTLTT RQSRPSTSSS VTESTKDIDK
201: ERLSSELRDI QNSRKMMPSA RSMQSFRDKL PAFKMREEFL KAVAANQVLV ISGETGCGKT TQLPQFILEE EIDNLRGADC SIICTQPRRI SAISVAARIA
301: SERGEELGDT VGYQIRLESK RSAQTRLLFC TTGVLLRRLV QEPDLVGVSH LLVDEIHERG MNEDFLIIIL RDLLPRRPDL RLVLMSATIN AELFSKYFGE
401: APIMHIPGFT FPVTELFLED ILEKTRYKIN SERDNFQGNS RRKRLASVKS DPISDAFEDV DIYKEYGNYS VATRQSLEAW SATELNLSLV EGTIEYICRH
501: EGEGAILVFL TGWDEISKLL DKIKGNNLLG NSNRFLVIPL HGSMPTVNQR EIFDRPPANM RKIVLATNIA ESSITIDDVV YVIDCGKAKE TSYDALNKLA
601: CLLPSWISKA SAHQRRGRAG RVQPGACYRL YPKVIYDAMP QFQLPEILRT PLQELCLTIK SLQLGAVASF LAKALQPPDP LSVNNAIELL KTVGALDDVE
701: ELTSLGRHLC TLPLDPNIGK MLLIGSVFQC LDPALTIAAA LAYRNPFVLP IDRKEEADAV KRSFAGDSCS DHIALVKAFE AWKEARRSGR ERSFCWENFL
801: SPMTLQMMDD MRNQFFDLLS DIGFVSKTRG LKAYNYYGKD LEMVCAVLCA GLYPNVVQCK RRGKRTAFYT KDVGKVDIHP SSVNAGIHQF PLPYLVYSEK
901: VKTASIYVRD STNISDYALL LFGGSLSESK TGEGIEMLGG YLHFSAPRRI IELIQRLRGE LDKLLQRKIE EPALDIFSEG KGVVAAAVEL LHSQNVHH
101: NILADMAQRQ GLYFNVYNKG KTIVFSKVPL PDYRADLDER HGSTQQEIRM SNETERRVES LLAKAKSNSN DSASTSTLTT RQSRPSTSSS VTESTKDIDK
201: ERLSSELRDI QNSRKMMPSA RSMQSFRDKL PAFKMREEFL KAVAANQVLV ISGETGCGKT TQLPQFILEE EIDNLRGADC SIICTQPRRI SAISVAARIA
301: SERGEELGDT VGYQIRLESK RSAQTRLLFC TTGVLLRRLV QEPDLVGVSH LLVDEIHERG MNEDFLIIIL RDLLPRRPDL RLVLMSATIN AELFSKYFGE
401: APIMHIPGFT FPVTELFLED ILEKTRYKIN SERDNFQGNS RRKRLASVKS DPISDAFEDV DIYKEYGNYS VATRQSLEAW SATELNLSLV EGTIEYICRH
501: EGEGAILVFL TGWDEISKLL DKIKGNNLLG NSNRFLVIPL HGSMPTVNQR EIFDRPPANM RKIVLATNIA ESSITIDDVV YVIDCGKAKE TSYDALNKLA
601: CLLPSWISKA SAHQRRGRAG RVQPGACYRL YPKVIYDAMP QFQLPEILRT PLQELCLTIK SLQLGAVASF LAKALQPPDP LSVNNAIELL KTVGALDDVE
701: ELTSLGRHLC TLPLDPNIGK MLLIGSVFQC LDPALTIAAA LAYRNPFVLP IDRKEEADAV KRSFAGDSCS DHIALVKAFE AWKEARRSGR ERSFCWENFL
801: SPMTLQMMDD MRNQFFDLLS DIGFVSKTRG LKAYNYYGKD LEMVCAVLCA GLYPNVVQCK RRGKRTAFYT KDVGKVDIHP SSVNAGIHQF PLPYLVYSEK
901: VKTASIYVRD STNISDYALL LFGGSLSESK TGEGIEMLGG YLHFSAPRRI IELIQRLRGE LDKLLQRKIE EPALDIFSEG KGVVAAAVEL LHSQNVHH
0001: MQQSLSCFST LRFLLPFSSK LSPLRPLFHT AAMPPHGPNS QGGRRGGGHS SGRRGGRGGG GRGGGGGGRG EQRWWDPVWR AERLRQQQAE MEVLDENEWW
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH
Arabidopsis Description
RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.