Factsheet for Os11t0310800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87951	Sorghum	nucleus, plastid	91.24	91.63
TraesCS4B01G075500.1	Wheat	nucleus	90.54	90.92
TraesCS4D01G074200.1	Wheat	nucleus	90.4	90.78
TraesCS4A01G239500.2	Wheat	nucleus	90.25	90.64
Zm00001d045147_P015	Maize	nucleus	90.11	90.37
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	38.56	78.22
VIT_01s0010g02780.t01	Wine grape	nucleus	67.23	74.38
KRH58751	Soybean	nucleus	70.9	72.02
Bra010915.1-P	Field mustard	nucleus	71.47	71.77
CDX90112	Canola	nucleus	71.47	71.77
AT1G27900.1	Thale cress	nucleus	70.76	71.57
CDY11762	Canola	nucleus	71.05	71.45
Solyc05g015040.2.1	Tomato	nucleus	70.34	71.14
GSMUA_Achr2P20940_001	Banana	nucleus	63.14	66.62
Os08t0335000-00	Rice	cytosol, nucleus	21.19	40.87
Os02t0301500-01	Rice	nucleus	31.21	40.48
Os03t0314100-01	Rice	cytosol, nucleus, plastid	30.93	38.83
Os01t0212100-01	Rice	nucleus	37.01	37.43
Os06t0192500-02	Rice	mitochondrion	19.77	34.31
Os06t0343100-01	Rice	nucleus	40.25	26.29
Os05t0389800-01	Rice	nucleus	37.99	25.14
Os07t0508000-01	Rice	nucleus	40.11	22.19
Os10t0471350-01	Rice	nucleus	30.65	21.74
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	25.0	21.64
Os02t0736600-01	Rice	nucleus	33.33	18.55
Os03t0748800-01	Rice	mitochondrion	29.94	18.43
Os01t0767700-01	Rice	nucleus	27.97	16.19
Os07t0621500-01	Rice	cytosol, nucleus	19.77	10.88
Os04t0432200-00	Rice	extracellular	0.71	6.85
Os02t0736800-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4350353	ProteinID:ABA92900.2	ProteinID:BAF28119.2
ProteinID:BAT13728.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	ProteinID:EEE52024.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os11g0310800	EnsemblPlants:Os11t0310800-01	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF131	UniProt:Q2R6C2	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI0000D89A8A	RefSeq:XP_015617830.1	SEG:seg	:	:

Description

DEAD-like helicase, N-terminal domain containing protein. (Os11t0310800-01)

Coordinates

chr11:+:11908797..11924762

Molecular Weight (calculated)

79301.3 Da

IEP (calculated)

7.768

GRAVY (calculated)

-0.391

Length

708 amino acids

Sequence
(BLAST)

001: MPSPPPPPQP SPPELPISEH EDEIMAAVEA NPVVVVIGET GSGKSTQLSQ ILHRRGYTRR GAIAVTQPRR VAAVSVSRRV AQELSVPLGD EVGYAIRFED
101: RTSEKTCIKY LTDGVLLRES LSDPELKQYS VIILDEAHER SLNTDILLGL MKRLIKDRAS DLKVLITSAT LDGLKVSKFF SGCPVLNIPG TLFPVEKFYS
201: TEHPTNYIES SLRTAIDIHV KESPGDVLIF MTGKDDIDKM VSKLEERIQN LEEGSCMDAL VLPLHGSLPP EQQVRVFAPA PPNCRRFIVA TNVAETSLTV
301: DGVVFVIDCG YVKQRQYNPS SGMYSLDVVQ ISRVQADQRA GRAGRTRPGK CYRLYPISIY QKEFLEATIP EIQRSSLAGS VLYLKSLDLP DINILKFDFL
401: DPPSRESLED ALRQLYLIDA IDENGQITDV GRIMAELPLE PSLSRTLIEA NELGCLSQAL TVAAVLSAEI TFRSTRSKDM EGKRKRQELP DGSGWGDHIQ
501: LLQIFESWDR TGYDPRWCSD HELQVRGMKF SKDVRNQLSQ IIQKIAKGST DVQAKKERKS DPDYRKLRRA LCVGYGNQLA ERMLHHNGYH TVGYRAQLVQ
601: VHPFSVLEGD EYGKLPVYVV YHELINTTRP FMRNVSAVDQ SWVKPILKKL ERLDMNKLSG GSSGSKDPEP LEDKQVSSPK KAMDVKQSDV DSKIQAARER
701: YLARKGKK

Best Arabidopsis Sequence Match ( AT1G27900.1 )
(BLAST)

001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.