Factsheet for Solyc05g015040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	49.43	99.14
VIT_01s0010g02780.t01	Wine grape	nucleus	72.14	78.91
CDY11762	Canola	nucleus	76.14	75.71
KRH58751	Soybean	nucleus	75.29	75.61
Bra010915.1-P	Field mustard	nucleus	76.14	75.6
CDX90112	Canola	nucleus	76.14	75.6
AT1G27900.1	Thale cress	nucleus	75.43	75.43
TraesCS4B01G075500.1	Wheat	nucleus	72.14	71.63
TraesCS4D01G074200.1	Wheat	nucleus	71.86	71.35
TraesCS4A01G239500.2	Wheat	nucleus	71.71	71.21
EER87951	Sorghum	nucleus, plastid	71.0	70.5
Os11t0310800-01	Rice	nucleus	71.14	70.34
Zm00001d045147_P015	Maize	nucleus	70.14	69.55
GSMUA_Achr2P20940_001	Banana	nucleus	60.71	63.34
Solyc09g097820.2.1	Tomato	nucleus	37.29	37.66
Solyc01g079250.2.1	Tomato	nucleus	38.86	37.62
Solyc09g008120.2.1	Tomato	nucleus	37.0	36.43
Solyc12g089010.1.1	Tomato	nucleus	39.71	34.32
Solyc03g115390.2.1	Tomato	nucleus	40.0	30.8
Solyc12g017700.1.1	Tomato	nucleus	38.14	30.14
Solyc01g110990.2.1	Tomato	nucleus	42.29	26.64
Solyc07g039550.2.1	Tomato	nucleus	42.86	25.21
Solyc10g076910.1.1	Tomato	nucleus	41.29	22.49
Solyc01g006970.2.1	Tomato	nucleus	30.57	20.76
Solyc04g007510.2.1	Tomato	plastid	31.29	18.98
Solyc01g095710.2.1	Tomato	nucleus	34.71	18.12
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	30.57	17.82
Solyc01g006710.2.1	Tomato	mitochondrion	28.29	17.01
Solyc07g044930.2.1	Tomato	nucleus	28.29	16.51
Solyc01g103690.2.1	Tomato	nucleus	30.43	14.81
Solyc04g014210.2.1	Tomato	nucleus	31.29	12.66
Solyc11g010310.1.1	Tomato	nucleus	30.0	12.32

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K4BYM2	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF131	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc05g015040.2	EnsemblPlants:Solyc05g015040.2.1	UniParc:UPI00027668A5	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:9724620..9743463

Molecular Weight (calculated)

78818.3 Da

IEP (calculated)

7.995

GRAVY (calculated)

-0.279

Length

700 amino acids

Sequence
(BLAST)

001: MGDLPIVRFE EKIVETVKEN PVVVVIGETG SGKSTQLPQI LYRRGYAKSG IIAVTQPRRV AAVSVSRRVA QEQNVRIGEE VGYAIRFEDR TSEKTRIKYL
101: TDGVLLRESL FNPELNQYSV IILDEAHERS LNTDILLGLM KRLIKWRHSN LKVLITSATL DGGKVSRFFS DCPVLTVPGE LFPVEIVHIS EPPKSYVEAS
201: LKKAIDIHVR EPEGDILIFM TGQDDIEKLV LKLEERVQSL EEGSCMDALI LPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPST GMYSLEVVQI SKVQAKQRAG RAGRTRPGKC YRLYPSTVYH DDFLDATVPE IQRSSLAGTV LYLKSLDLAD MDILKFDFLD SPSVKSLEDA
401: LKQLYLVDAL DENGSITSLG RKMAELPLEP SLSRTLLEAN ELDCLSQALT VVSMLSAETT LLPAPSKSSE KKRRHTPSNL PDGFGLGDHI QLLQIYEQWY
501: QTDYNIDWCK ENNLQVRGML FVRDVRKQLS QIMQKITEGS LDVQTSNRRR GGQQEYKNLR KALCIGYANQ LAERMIRHNG YRPLGFKSEL VQVHPSSVLK
601: SDEDGMLPNY VVYHELIVTS RPFMRNVCAV EMRWVAPILA KLEKLNVFKL SGGSSQPDNQ IQEVALTVEK KEIAAVQPPE DRASMIQAAR ERFLARKGQK

Best Arabidopsis Sequence Match ( AT1G27900.1 )
(BLAST)

001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.