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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400060759 Potato nucleus 96.59 96.65
Solyc11g010310.1.1 Tomato nucleus 69.08 70.09
GSMUA_Achr8P17640_001 Banana nucleus 41.91 58.85
KRG97543 Soybean nucleus, plastid 57.46 57.49
KRH31333 Soybean nucleus, plastid 57.46 57.26
VIT_07s0191g00210.t01 Wine grape nucleus 54.22 54.0
Os07t0621500-01 Rice cytosol, nucleus 39.88 53.61
OQU90279 Sorghum nucleus 46.88 53.46
TraesCS5B01G080500.1 Wheat nucleus 40.46 52.91
Bra006057.1-P Field mustard plastid 52.89 52.14
CDX78376 Canola plastid 52.83 52.02
CDX81170 Canola plastid 52.95 51.96
AT5G10370.1 Thale cress nucleus 52.95 51.61
AT4G01020.1 Thale cress nucleus 52.83 51.15
CDX69841 Canola plastid 51.27 50.2
CDX96996 Canola nucleus 51.27 50.14
Bra009038.1-P Field mustard plastid 51.16 50.08
TraesCS2B01G190100.1 Wheat nucleus 49.25 49.13
TraesCS5D01G087800.2 Wheat nucleus 47.51 49.07
TraesCS2D01G171200.2 Wheat nucleus 49.48 49.03
Zm00001d022176_P002 Maize nucleus 49.6 48.97
TraesCS5A01G074100.1 Wheat nucleus 47.46 48.87
TraesCS3D01G112900.1 Wheat nucleus 37.17 48.09
TraesCS3B01G129700.1 Wheat nucleus 45.03 47.91
TraesCS3A01G111000.1 Wheat nucleus 48.44 47.78
HORVU5Hr1G019730.1 Barley nucleus, plastid 47.05 47.66
TraesCS2A01G164100.1 Wheat nucleus 49.31 47.1
HORVU2Hr1G030040.17 Barley nucleus 49.02 46.47
Solyc09g097820.2.1 Tomato nucleus 13.18 32.9
Solyc09g008120.2.1 Tomato nucleus 12.89 31.36
Solyc05g015040.2.1 Tomato nucleus 12.66 31.29
Solyc01g079250.2.1 Tomato nucleus 12.43 29.74
Solyc12g089010.1.1 Tomato nucleus 13.35 28.52
Solyc03g115390.2.1 Tomato nucleus 13.81 26.29
Solyc12g017700.1.1 Tomato nucleus 13.24 25.85
Solyc01g110990.2.1 Tomato nucleus 15.03 23.4
Solyc07g039550.2.1 Tomato nucleus 15.26 22.18
Solyc04g007510.2.1 Tomato plastid 13.53 20.28
Solyc03g118920.2.1 Tomato mitochondrion, nucleus 13.87 19.98
Solyc01g006970.2.1 Tomato nucleus 11.91 19.98
Solyc01g006710.2.1 Tomato mitochondrion 13.12 19.5
Solyc10g076910.1.1 Tomato nucleus 14.34 19.3
Solyc01g095710.2.1 Tomato nucleus 13.64 17.6
Solyc07g044930.2.1 Tomato nucleus 11.62 16.76
Solyc01g103690.2.1 Tomato nucleus 12.95 15.58
Protein Annotations
Gene3D:1.10.10.2130Gene3D:1.20.120.1750MapMan:19.2.2.1.5.4.3Gene3D:3.30.40.10Gene3D:3.40.50.300InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA/RNA_helicase_DEAH_CSInterPro:DUF1605GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003824GO:GO:0004004GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006139
GO:GO:0006396GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0046872
InterPro:Helicase-assoc_domInterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IBR_domInterPro:IPR001650InterPro:IPR001841
InterPro:IPR013083InterPro:IPR013087InterPro:IPR014001InterPro:IPR036612UniProt:K4BPS5InterPro:KH_dom_type_1_sf
InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF01485PFAM:PF04408PFAM:PF07717
ScanProsite:PS00028ScanProsite:PS00518ScanProsite:PS00690PFscan:PS50089PFscan:PS51192PFscan:PS51194
PANTHER:PTHR18934PANTHER:PTHR18934:SF81InterPro:RBD_domain_sfSMART:SM00487SMART:SM00490SMART:SM00647
SMART:SM00847SUPFAM:SSF52540SUPFAM:SSF54791SUPFAM:SSF54928SUPFAM:SSF57850EnsemblPlantsGene:Solyc04g014210.2
EnsemblPlants:Solyc04g014210.2.1UniParc:UPI000276640DInterPro:Znf_C2H2_typeInterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CS
SEG:seg:::::
Description
No Description!
Coordinates
chr4:+:4509385..4517601
Molecular Weight (calculated)
194320.0 Da
IEP (calculated)
7.431
GRAVY (calculated)
-0.196
Length
1730 amino acids
Sequence
(BLAST)
0001: MHDSSSYNRR FPAPAMYHQH CYRSSSNRPC RPGFYSSSYE LDRPPGHSHK SPNFVIQLRY GNRRINRYGL DDLIEKLPFA PRSSFVFSKG FLSGSLLYDQ
0101: WSETLEVIVK LWRMRLSGSH SFTPWVKRNV EVPSDEDELK GRVKMVFLEE LKGLLVEGEL LQKWEKKLEL LRDEICELSR LLKNRNNLRV CNEFLKKREG
0201: LEKESDLIRK RIEEFKRGIE CIIQQLEETS LEEGGSRVFK IGTEFDWSKI HCLMMRECRR LDDGLPIFAF RQQILRQIHY QQVTVLIGET GSGKSTQLVQ
0301: FLADCGVTGN GSIVCTQPRK LAANSLAQRV KQESEGCYED NSIICYPSYS SGHKFDSKVV FMTDHCLLQH YMVDKSLSKI SCIIVDEAHE RSLDTDLLLA
0401: LIKNLLLQRL DLRLVIMSAT ADAAQLADYF FGCGTFHVAG RTFPVDIEYV PCESSGCLGV GPISSYVYDV VKMVTEIHET EGEGTILAFL TSQIEVEWAC
0501: VKFQTLSAIS LPLHGKLSHE EQHRVFLSYP GKRKVIFTTN VAETSLTIPG VKYVVDSGMV KESRFEPGTC MSILRICNVS QSSAKQRAGR AGRTGPGRCY
0601: RLYSESDFEG MSHHQEPEIR KVHLGVAVLR ILALGIKNVH DFDFVDAPSP KAIEMATRNL VQLGAVGKKD SAYELTIEGH KIIKLGIEPR LGKLILSCFN
0701: QRLSREGVVL AAVMANSSSI FCRVGSEGDK LKSDCLKVQF CHPNGDLFTL LSVYKEWEAV PKEGKNSWCW DNSINAKSMR RCQETVQELE ACLKSELNII
0801: VASYWHWDPQ MHTEHDETLK RIILSSFAEN VAMYSGYDQL GYEVALSKKY IQLHPSCSLL NFDRRPTWVV FGEILSAANE YLVCVTAFEF SSLSALSPSP
0901: LFNFLEMDAQ KLEKKVLTGF GSMLLKRFCG KSNSSVNNLV SRIRTKYMDE RIGIQVNVGK NEVLLYASSS DMESVLGQVN GALEYESKLL QNECLEKGLF
1001: SGGSAASASV ALLGAGAIVK HLELKKRILA VDIFHSNTKA VDDKELLMFL ERNTSSDICA VHKSSGTGHD NEENRWGRVT FLSPDAAKQA MLLNQVECNG
1101: GFLKVVPSRS VFSNDQKQFS SVLRTRVNWP RRCCNGVAIV KCEPNDVGFM VKDFSVVMIG GNTIRSKPSN KYSDSIVISG LNTDHSETEV LEILSGATDG
1201: KILDFFFVRG SAVENPPVAA CEEALRREIS PFMPKKAPFV QSIRVQVFQP EPKDTYMRAS IMFDGSLHLE AAKALEHIDG KVLSGCLPWQ KIRCQQQFHS
1301: SVSCPAPVYH VIRNQLDSLL PCLQRRNGVE CNLERNENGS FRVKISASAT KIVAELRRPL EQLMKGKIVD HVGISPTVVQ LLFSREGNNI MKMVQQETGT
1401: YILFDRHSLS VRIFGSSDKI DMAERKFVNS LLALHESKQL EVHLRGGLLP LDLMKRVVQS FGPDLSGLKL KVPDAEFSLN TKRHCISVKG TKDMKQKVEE
1501: IISEIAHSGL PSIMMDNETD CPICLCELED AYRLEGCTHT FCRSCLLEQC ESAIRSREGF PLCCMHKGCG AHILVSDLRS LLSNDKLEEL FRASLGAFVA
1601: ASGGLYRFCP SPDCPSVYHV TESGEAGAPF ICGACYVETC TSCHLEYHPY ISCEKYKEFK DNPDFSLEEW AKGKENVKKC PVCGFTIEKI DGCNHIECKC
1701: GKHVCWVCLV FFSSSDDCYN HLRSLHQAIM
Best Arabidopsis Sequence Match ( AT5G10370.1 )
(BLAST)
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.