Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G112900.1 | Wheat | nucleus | 79.58 | 96.78 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 96.06 | 89.05 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 83.83 | 78.6 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 62.61 | 76.95 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 56.52 | 71.41 |
| OQU90279 | Sorghum | nucleus | 64.02 | 68.62 |
| Zm00001d022176_P002 | Maize | nucleus | 70.73 | 65.64 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 41.7 | 55.03 |
| PGSC0003DMT400041805 | Potato | nucleus | 46.43 | 46.55 |
| KRG97543 | Soybean | nucleus, plastid | 49.02 | 46.1 |
| KRH31333 | Soybean | nucleus, plastid | 48.71 | 45.62 |
| Solyc04g014210.2.1 | Tomato | nucleus | 47.91 | 45.03 |
| Solyc11g010310.1.1 | Tomato | nucleus | 46.92 | 44.75 |
| PGSC0003DMT400060759 | Potato | nucleus | 47.54 | 44.71 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 44.9 | 42.03 |
| AT5G10370.1 | Thale cress | nucleus | 45.7 | 41.86 |
| Bra006057.1-P | Field mustard | plastid | 45.02 | 41.71 |
| CDX81170 | Canola | plastid | 45.14 | 41.63 |
| AT4G01020.1 | Thale cress | nucleus | 45.7 | 41.58 |
| CDX78376 | Canola | plastid | 44.9 | 41.55 |
| CDX96996 | Canola | nucleus | 44.1 | 40.53 |
| Bra009038.1-P | Field mustard | plastid | 43.91 | 40.41 |
| CDX69841 | Canola | plastid | 43.85 | 40.35 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 13.04 | 30.24 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 13.41 | 30.24 |
| TraesCS4B01G075500.1 | Wheat | nucleus | 12.92 | 29.79 |
| TraesCS1B01G398400.1 | Wheat | cytosol | 7.2 | 29.62 |
| TraesCS7B01G060800.1 | Wheat | plastid | 12.79 | 29.17 |
| TraesCS1B01G398100.1 | Wheat | cytosol | 10.82 | 25.54 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 14.94 | 23.23 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 15.01 | 22.68 |
| TraesCS1B01G254900.1 | Wheat | nucleus | 14.64 | 22.45 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 13.65 | 21.53 |
| TraesCS5B01G392800.1 | Wheat | nucleus | 14.76 | 20.87 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 14.94 | 19.69 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 15.25 | 19.64 |
| TraesCS3B01G024900.1 | Wheat | mitochondrion | 14.45 | 18.85 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 12.79 | 17.41 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 13.59 | 17.19 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 13.71 | 16.91 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 13.71 | 15.62 |
Protein Annotations
| Gene3D:1.10.10.2130 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF04408 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS50089 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | InterPro:RBD_domain_sf | SMART:SM00184 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54928 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS3B01G129700 |
| EnsemblPlants:TraesCS3B01G129700.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:111683337..111690911
Molecular Weight (calculated)
181849.0 Da
IEP (calculated)
7.541
GRAVY (calculated)
-0.187
Length
1626 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRPSQDRRPF RPPDRFSPPP HLHRQPPPHA RQFAVILLRA GPSFSSPPAT EVDALVAGLQ SPPPDNLSVC SAGRQAARLL FRSLPAAAAA ARELWSLRLD
0101: GLHLLTPYLP DAALASHAFP LVASLFASHA SRLLDSGLVS RSAARSAELA VSIQSVKRRL RGHNNFRDFD QFNLQKKTLE AEKELVDAKI AEYKAAMSSI
0201: RRAMLRGTDD EEEVEEEGVD VFGIGEGEDV DFVRLHMMMM RECRRLNEGL PIYSYRRKIL NHIFNNQVMI LIGETGSGKS TQLVQFLADS GLSGNDSVVC
0301: TQPRKIAALS LAHRVDEESK GCYADNFVSS YSSFLNYQNF SSKIIFCTDS CLLHHCMNDA DLNGISYIIV DEAHERSLNT DLLLALIKQK LLDRLNLRLI
0401: IMSATADANR LAEYFYGCQT FHVKGRNFPV EIKYVPDVSV DASFNIVPNS LCGPCAAASY VNDVIRQVSI IHKNEEEGAI LAFLTSQLEV EWACENFTDA
0501: SAVVLPMHGK LSPVEQSRVF KSYSGMRKII FCTNIAETSL TIKEVKYVVD SGLVKDSRFV PSSGLNVLKV NWISQSSANQ RAGRAGRTGV GKCYRLYSEA
0601: DFSMMELHQE PEIQKVHLGT AVLRILALGV KDARNFEFVD APNPEAINMA VKNLEQLGAV KCNCNCYELT DTGRHLVKLG IEPRLGKIML DCFGFGLRKE
0701: GVVLAAVMAN SSSIFCRVGT DEEKHKADLQ KVRLCHQDGD LFTLLAVYKK WEDGHENRNM WCWQNSINAK TMRRCQETIS ELENCLKHEL KIIIPSYWCW
0801: NPEAPSEHDK LLKRIILSSL AGNLAMFLGH ERFGYQVIST DQIVNLHPSC SLLNYGTKPD WVVFSEILSV PNQYLVCVTA VDHDALYAIH PMSSIQQLEK
0901: HKLQIKVISG LGNNLLGKFV GKSGQNQQKI ISRLKEDCRD DRVTVEVNFN NNEVVLFATA QHMEKVFCIV NNALECEGKL MRNECLERSL FPERSGSSPI
1001: ALFGSGAEVK HLELGKRYLT VEVLHQNASD INDKELISLV DSLVSGVANF HKSSGNFRLG SGETKWGKIT FLKPENAEDA VSKLNGVEFY GSSLKIVPVC
1101: SPDNQGLRFP SVRAKLCWPR KESRGLALVT CASGEAQSVV DDCFALGIDG RYISCRVSKK EENCVFVERI PLHVSELELY DAFRSTTTRR ILNIRLLRVK
1201: EATIASPSVS VCEEALIREI SPFMPNKSFP GKSFRVEVFP PEENDSMMRA TLTFDGNLHR EAARALDHLE GSILPCCQPW QIIQCKHVFH STMSCSVRVY
1301: NVISQEVTSL LESFRSQKGV SYNYEKTENG IFRVKLTANA TKTIADLRRP LEILMKGKTI NHPDLTLSAV QMLLSRDGVA HLKSIEQETG TYILYDRQSL
1401: NIKVFGHQHH MAEAEAKLVH ALPQLLEKRP LEICLRGHNL PPDLMKKTVE NFGVDLEGFK TVTPSVKVEL HKHRHILKVW GSKEDKRRVE GMISELITSV
1501: KHNVPVHLPS ENFGGGKEDN QRVADNELSM DACPICLCET EDPFKLESCG HIFCRACLVD QCEVATKSHD GFPVCCLKTG CKKPFLIVDL KHLVSNEKLE
1601: DLFRASLRAF VASRAGIYRF CPTPDC
0101: GLHLLTPYLP DAALASHAFP LVASLFASHA SRLLDSGLVS RSAARSAELA VSIQSVKRRL RGHNNFRDFD QFNLQKKTLE AEKELVDAKI AEYKAAMSSI
0201: RRAMLRGTDD EEEVEEEGVD VFGIGEGEDV DFVRLHMMMM RECRRLNEGL PIYSYRRKIL NHIFNNQVMI LIGETGSGKS TQLVQFLADS GLSGNDSVVC
0301: TQPRKIAALS LAHRVDEESK GCYADNFVSS YSSFLNYQNF SSKIIFCTDS CLLHHCMNDA DLNGISYIIV DEAHERSLNT DLLLALIKQK LLDRLNLRLI
0401: IMSATADANR LAEYFYGCQT FHVKGRNFPV EIKYVPDVSV DASFNIVPNS LCGPCAAASY VNDVIRQVSI IHKNEEEGAI LAFLTSQLEV EWACENFTDA
0501: SAVVLPMHGK LSPVEQSRVF KSYSGMRKII FCTNIAETSL TIKEVKYVVD SGLVKDSRFV PSSGLNVLKV NWISQSSANQ RAGRAGRTGV GKCYRLYSEA
0601: DFSMMELHQE PEIQKVHLGT AVLRILALGV KDARNFEFVD APNPEAINMA VKNLEQLGAV KCNCNCYELT DTGRHLVKLG IEPRLGKIML DCFGFGLRKE
0701: GVVLAAVMAN SSSIFCRVGT DEEKHKADLQ KVRLCHQDGD LFTLLAVYKK WEDGHENRNM WCWQNSINAK TMRRCQETIS ELENCLKHEL KIIIPSYWCW
0801: NPEAPSEHDK LLKRIILSSL AGNLAMFLGH ERFGYQVIST DQIVNLHPSC SLLNYGTKPD WVVFSEILSV PNQYLVCVTA VDHDALYAIH PMSSIQQLEK
0901: HKLQIKVISG LGNNLLGKFV GKSGQNQQKI ISRLKEDCRD DRVTVEVNFN NNEVVLFATA QHMEKVFCIV NNALECEGKL MRNECLERSL FPERSGSSPI
1001: ALFGSGAEVK HLELGKRYLT VEVLHQNASD INDKELISLV DSLVSGVANF HKSSGNFRLG SGETKWGKIT FLKPENAEDA VSKLNGVEFY GSSLKIVPVC
1101: SPDNQGLRFP SVRAKLCWPR KESRGLALVT CASGEAQSVV DDCFALGIDG RYISCRVSKK EENCVFVERI PLHVSELELY DAFRSTTTRR ILNIRLLRVK
1201: EATIASPSVS VCEEALIREI SPFMPNKSFP GKSFRVEVFP PEENDSMMRA TLTFDGNLHR EAARALDHLE GSILPCCQPW QIIQCKHVFH STMSCSVRVY
1301: NVISQEVTSL LESFRSQKGV SYNYEKTENG IFRVKLTANA TKTIADLRRP LEILMKGKTI NHPDLTLSAV QMLLSRDGVA HLKSIEQETG TYILYDRQSL
1401: NIKVFGHQHH MAEAEAKLVH ALPQLLEKRP LEICLRGHNL PPDLMKKTVE NFGVDLEGFK TVTPSVKVEL HKHRHILKVW GSKEDKRRVE GMISELITSV
1501: KHNVPVHLPS ENFGGGKEDN QRVADNELSM DACPICLCET EDPFKLESCG HIFCRACLVD QCEVATKSHD GFPVCCLKTG CKKPFLIVDL KHLVSNEKLE
1601: DLFRASLRAF VASRAGIYRF CPTPDC
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.