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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78376 Canola plastid 97.22 97.55
CDX96996 Canola nucleus 83.32 83.04
CDX69841 Canola plastid 81.74 81.55
AT5G10370.1 Thale cress nucleus 81.11 80.56
AT4G01020.1 Thale cress nucleus 80.26 79.18
KRG97543 Soybean nucleus, plastid 54.79 55.87
KRH31333 Soybean nucleus, plastid 53.94 54.78
PGSC0003DMT400041805 Potato nucleus 50.31 54.69
GSMUA_Achr8P17640_001 Banana nucleus 37.66 53.9
Solyc04g014210.2.1 Tomato nucleus 51.96 52.95
Solyc11g010310.1.1 Tomato nucleus 50.94 52.67
PGSC0003DMT400060759 Potato nucleus 51.62 52.63
VIT_07s0191g00210.t01 Wine grape nucleus 49.12 49.86
OQU90279 Sorghum nucleus 42.31 49.18
TraesCS5B01G080500.1 Wheat nucleus 36.64 48.83
Os07t0621500-01 Rice cytosol, nucleus 35.45 48.56
TraesCS5A01G074100.1 Wheat nucleus 44.53 46.73
TraesCS5D01G087800.2 Wheat nucleus 44.36 46.69
TraesCS2D01G171200.2 Wheat nucleus 46.06 46.51
TraesCS2B01G190100.1 Wheat nucleus 45.6 46.37
Zm00001d022176_P002 Maize nucleus 45.6 45.89
TraesCS3D01G112900.1 Wheat nucleus 34.43 45.4
TraesCS3B01G129700.1 Wheat nucleus 41.63 45.14
HORVU5Hr1G019730.1 Barley nucleus, plastid 43.73 45.14
TraesCS3A01G111000.1 Wheat nucleus 44.7 44.93
TraesCS2A01G164100.1 Wheat nucleus 45.89 44.67
HORVU2Hr1G030040.17 Barley nucleus 45.15 43.62
CDX74059 Canola nucleus 5.16 34.47
CDY68405 Canola nucleus 12.48 32.84
CDY23338 Canola cytosol 7.83 32.7
CDY36075 Canola nucleus 12.42 32.49
CDY34567 Canola nucleus 12.2 32.43
CDX74061 Canola cytosol 5.9 32.4
CDY11762 Canola nucleus 12.76 31.96
CDX90112 Canola nucleus 12.76 31.91
CDY11413 Canola nucleus 12.76 31.34
CDX99466 Canola nucleus 12.42 31.29
CDX85017 Canola cytosol, plastid 12.76 31.16
CDX78859 Canola nucleus 12.31 31.09
CDX76626 Canola nucleus 12.65 31.06
CDY16154 Canola nucleus, plastid 12.71 30.98
CDY37024 Canola cytosol, mitochondrion 5.62 30.56
CDY32702 Canola nucleus 11.97 30.49
CDX83337 Canola cytosol 12.42 30.29
CDX95715 Canola cytosol 12.42 30.21
CDY02818 Canola nucleus 11.29 29.97
CDY60185 Canola nucleus 13.61 27.94
CDY40514 Canola nucleus 13.61 27.87
CDY26898 Canola nucleus 14.12 23.85
CDY32278 Canola endoplasmic reticulum 14.12 23.85
CDX83624 Canola nucleus 14.8 23.41
CDY13640 Canola nucleus 14.8 23.2
CDY23802 Canola nucleus 6.75 22.67
CDY17694 Canola nucleus 14.58 22.64
CDY57512 Canola nucleus 14.58 22.64
CDX98799 Canola mitochondrion 14.46 22.1
CDX70187 Canola mitochondrion 14.41 21.97
CDX93688 Canola plastid 14.46 21.61
CDY40601 Canola nucleus, plastid 14.46 21.59
CDX79642 Canola nucleus, vacuole 12.54 21.35
CDX84588 Canola plastid, vacuole 12.48 21.26
CDX85676 Canola nucleus 13.73 19.39
CDX91151 Canola nucleus 13.73 19.38
CDY10756 Canola nucleus 11.51 18.64
CDY48353 Canola nucleus 12.54 18.07
CDY34159 Canola nucleus 12.59 17.95
CDX91491 Canola nucleus 0.62 17.46
CDY51663 Canola nucleus 0.62 17.46
CDY39917 Canola nucleus 13.44 16.77
CDY10215 Canola nucleus 12.2 16.74
CDX97797 Canola nucleus 12.25 16.73
CDY29164 Canola nucleus 13.5 16.71
CDY29644 Canola nucleus 12.31 16.6
CDY63687 Canola nucleus, plastid 9.7 15.41
Protein Annotations
Gene3D:1.10.10.2130Gene3D:1.20.120.1750MapMan:19.2.2.1.5.4.3Gene3D:3.30.40.10Gene3D:3.40.50.300GO:A0A078CWD0
EnsemblPlants:CDX81170ProteinID:CDX81170ProteinID:CDX81170.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domInterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003824GO:GO:0004386
GO:GO:0005488GO:GO:0005524GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00134628001InterPro:Helicase-assoc_domInterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IBR_domInterPro:IPR001650InterPro:IPR013083InterPro:IPR013087InterPro:IPR014001
InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF01485PFAM:PF04408PFAM:PF07717
ScanProsite:PS00028ScanProsite:PS00518ScanProsite:PS00690PFscan:PS51192PFscan:PS51194PANTHER:PTHR18934
PANTHER:PTHR18934:SF81SMART:SM00487SMART:SM00490SMART:SM00647SMART:SM00847SUPFAM:SSF52540
SUPFAM:SSF57850UniParc:UPI0004EE164FInterPro:Znf_C2H2_typeInterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CSSEG:seg
Description
BnaC03g04240D
Coordinates
chrLK031823:+:2030530..2036389
Molecular Weight (calculated)
198124.0 Da
IEP (calculated)
6.988
GRAVY (calculated)
-0.224
Length
1763 amino acids
Sequence
(BLAST)
0001: MKSSLPPADR GRSATNRYPS LPSASASTNF CNFRSPPLNH RQYPSSSFPP NYRRDRPPAT PNFIVQLVHP RISAAANSDA AKPSPSFSVR KQVISTLASL
0101: CGIPEESVHV PQFGCIAGSF SFRQWVDALS AVVALWEYRL QGKTLLVPEL VANVTVPSDV EELRDRLRGL FSAHVLSLME NGDCVKKVRA EIEEKTRQVE
0201: SFSSKRGIKL EAFERKKAIE AERDLVVKRL EEFKNGMNSI LRFLEGRDGE KDDVAVFSLE GDYDWPRIHS LIRRECRRLE DGLPIYAYRR NILKRIHGEQ
0301: VMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA ALTLADRVRE ESNGCYEENS VRCTPAFSST EEISSKVVFM TDNCLLQHYI KDRSLPGVSC
0401: VIIDEAHERS LNTDLLLALL KDLMCRRIDL RLVIMSATAD AYQLSEYFFG CGILCVTGRN FPVEIIYSPG DAEGSSGTGR IAPYADDVVK KAVEVHKTEK
0501: EGTILAFLTS QAEVEWACER FIAPSAVALP LHGKLSFEEQ FRVFQSHPGK RKVIFATNIA ETSLTIPGVK FVIDSGMVKE SKYEPRTGMS ILRVCRVSQS
0601: SARQRAGRAG RTEPGRCYRL YSKHEFESMN LNQEPEIRRV HLGVALLRIL ALGVDNVADF DFVDAPVPEA IAMAVKNLVQ LGAVIEKNGV LELTQEGHCL
0701: VKLGLEPKLG KLILGCFRHR MGKEGTVLAA VMANASSIFC RVGSLDDKMK ADCLKVQFCN PNGDLFTLLS VYKEWASLPR ERRNKWCWEN SLNAKSMRRC
0801: EDTVKELEIC IERELSLVSP SYWVWNPTEG NNNKHDKRLK TVILASLAEN VAMYTGYDQL GYEVALTGQQ VQLHPSCSLL AFGQKPNWVV FGELLSVVDQ
0901: YLVCVTSFDF EALSLLDPPP PFDASHMDEW RLRVEKVAGC SSTLLKRLCG KSNHGLLSIV SRARSLCVDE RISIQVDVDQ NEILLYAPPH DMEKVSALVS
1001: DALECEKKWM RNECLEKYIY HGRGQVPMAL FGSGAQIKHL EVDQRFLTAD VFYYGDSFVD DRELLRFLER KIDVCICSIH KFAGNKQDCD EKDKWGRITF
1101: LTPESAMKAT EIQRFDFNGS VLKLFPSLAT GGGGMFKMPS FPSVTAMIRW PQRESTGRGV LKCPSGDVHS VFNGTSDIVI GTRYARFETD QRFSDSILIT
1201: NIDSGLVEAD VLDALEFYTG RTDLEFFLLR RKSVRCPPPT VCADMLHKRI FACMSSSSPE PNCVQVKVFE PKESDYFMRA LITFDGRLHL EAAKALEELD
1301: GEVLPGCLSW QKIKCEQKFQ SSIICPASVY NIVKRQLNVK LTSFERQRGG TWHLEPTHGG AYRVKISAYA TKPISEMRRS LEELVRGRPI NHPGLTPRVL
1401: QHLSSRDGVV LMRRIQHETE TYILLDRHSL TVRICGSEEK IAAAEQELVR SLLAYHERQQ LEIRLRGPQL RPDLMKEVVN RFGPDLQGIK EKVNGVDLKL
1501: NTRYHVIQVH GSVEMRQEVE KIVYELAREG SEPGGEPDEI EVECPICLCE VDDGYSLEGC SHVFCKACLL EQLEASMRNF DAFPILCSHT DCGAPIVLAD
1601: MRALLSQEKL DELFKASLSS FVTTSDGNFR FCSTPDCPSV YRVAVGPRES GEPFICGACN AETCRRCHLE YHPYITCERY KLFKEDPDMS LKDWAKGKNV
1701: KECPFCKSTI EKSEGCNHLL CRCGKHICWV CLDFFTHQEP CYEHLRAVHG GIGIFDELGI PLL
Best Arabidopsis Sequence Match ( AT5G10370.1 )
(BLAST)
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.