Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36075 | Canola | nucleus | 93.36 | 91.84 |
| CDX85017 | Canola | cytosol, plastid | 84.16 | 77.29 |
| CDY16154 | Canola | nucleus, plastid | 83.71 | 76.76 |
| CDY02818 | Canola | nucleus | 76.47 | 76.36 |
| CDY32702 | Canola | nucleus | 79.49 | 76.16 |
| AT1G26370.1 | Thale cress | plastid | 78.88 | 72.94 |
| KRH70930 | Soybean | nucleus | 67.87 | 63.83 |
| KRH75071 | Soybean | nucleus | 67.42 | 63.4 |
| VIT_01s0137g00640.t01 | Wine grape | nucleus | 67.12 | 61.29 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 34.84 | 61.27 |
| Solyc09g008120.2.1 | Tomato | nucleus | 64.25 | 59.92 |
| KXG22666 | Sorghum | nucleus | 63.05 | 59.29 |
| Os06t0192500-02 | Rice | mitochondrion | 36.35 | 59.07 |
| TraesCS7D01G157100.1 | Wheat | plastid | 62.9 | 58.49 |
| TraesCS7A01G156700.1 | Wheat | plastid | 62.75 | 58.34 |
| TraesCS7B01G060800.1 | Wheat | plastid | 62.59 | 58.2 |
| Zm00001d011963_P002 | Maize | plasma membrane | 62.59 | 57.56 |
| HORVU7Hr1G032080.3 | Barley | plastid | 62.59 | 50.67 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 65.46 | 42.72 |
| CDX74061 | Canola | cytosol | 20.21 | 41.74 |
| CDY68405 | Canola | nucleus | 40.87 | 40.45 |
| CDX76626 | Canola | nucleus | 41.48 | 38.3 |
| CDY11413 | Canola | nucleus | 41.48 | 38.3 |
| CDX74059 | Canola | nucleus | 15.23 | 38.26 |
| CDX83337 | Canola | cytosol | 41.48 | 38.04 |
| CDX95715 | Canola | cytosol | 41.48 | 37.93 |
| CDX99466 | Canola | nucleus | 39.82 | 37.71 |
| CDX78859 | Canola | nucleus | 39.67 | 37.68 |
| CDX90112 | Canola | nucleus | 37.25 | 35.04 |
| CDY11762 | Canola | nucleus | 37.1 | 34.94 |
| CDY23338 | Canola | cytosol | 22.02 | 34.6 |
| CDY37024 | Canola | cytosol, mitochondrion | 16.74 | 34.26 |
| CDY60185 | Canola | nucleus | 41.63 | 32.13 |
| CDY40514 | Canola | nucleus | 41.63 | 32.06 |
| CDY26898 | Canola | nucleus | 43.89 | 27.87 |
| CDY32278 | Canola | endoplasmic reticulum | 43.89 | 27.87 |
| CDX83624 | Canola | nucleus | 45.1 | 26.82 |
| CDY13640 | Canola | nucleus | 45.1 | 26.58 |
| CDY23802 | Canola | nucleus | 18.55 | 23.43 |
| CDX85676 | Canola | nucleus | 38.46 | 20.43 |
| CDX91151 | Canola | nucleus | 38.46 | 20.42 |
| CDX84588 | Canola | plastid, vacuole | 30.47 | 19.52 |
| CDX79642 | Canola | nucleus, vacuole | 30.47 | 19.52 |
| CDY48353 | Canola | nucleus | 33.94 | 18.4 |
| CDY34159 | Canola | nucleus | 34.24 | 18.35 |
| CDX93688 | Canola | plastid | 31.67 | 17.8 |
| CDY40601 | Canola | nucleus, plastid | 31.67 | 17.78 |
| CDY17694 | Canola | nucleus | 30.32 | 17.71 |
| CDY57512 | Canola | nucleus | 30.17 | 17.62 |
| CDY51663 | Canola | nucleus | 1.66 | 17.46 |
| CDX91491 | Canola | nucleus | 1.66 | 17.46 |
| CDY10756 | Canola | nucleus | 28.05 | 17.08 |
| CDX70187 | Canola | mitochondrion | 29.11 | 16.7 |
| CDX98799 | Canola | mitochondrion | 28.96 | 16.64 |
| CDX97797 | Canola | nucleus | 28.66 | 14.72 |
| CDY63687 | Canola | nucleus, plastid | 24.28 | 14.5 |
| CDY29644 | Canola | nucleus | 28.51 | 14.46 |
| CDY10215 | Canola | nucleus | 27.6 | 14.25 |
| CDY39917 | Canola | nucleus | 29.86 | 14.01 |
| CDY29164 | Canola | nucleus | 29.71 | 13.83 |
| CDX78376 | Canola | plastid | 32.88 | 12.41 |
| CDX69841 | Canola | plastid | 32.88 | 12.34 |
| CDX96996 | Canola | nucleus | 32.88 | 12.32 |
| CDX81170 | Canola | plastid | 32.43 | 12.2 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078HA81 | UniProt:A0A078HA81 | EnsemblPlants:CDY34567 | ProteinID:CDY34567 |
| ProteinID:CDY34567.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00056995001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF85 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004EF101E | SEG:seg | : | : |
Description
BnaC03g56670DBnaC03g56670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HA81]
Coordinates
chrLK032337:-:152581..155555
Molecular Weight (calculated)
74625.2 Da
IEP (calculated)
8.201
GRAVY (calculated)
-0.220
Length
663 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQGELKSSV LNRKRNPKSP VASRSSKRQK IAEHRKSLPI ASEEEHLIKA VQKNDILIIV GETGSGKTTQ LPQFLFNAGF CREGKMVGIT QPRRIAALTI
101: AKRVAEECDV PLGQKVGYAV RFDDTTSSST RLKYMTDGFL LREALVDRLL SRYSVIIIDE AHERTVHTDV LLALLKKVQR ERISPLKLII MSASLDARVF
201: CDYYGGAKDF HVEGRQFDVD IFYTVHPETD YVDAALNTIF QIHSEEEEGD ILVFLTGQEE IESVERLVQE KLQHLPEDER KLLPLAIFSA LPSEQQMRVF
301: APAPIGSRKV VLATNIAETS ITIPGIRYVV DSGVVKARTY DPNKGMETLD VVPVSKAQAI QRSGRAGREG YGKSFHLYPE RDFWKLEDST KPEIKRCNLS
401: NVILQLKALG IDDIVGFDFI DKPSRSAIVK ALAELHLLGA LTDDCKLAKP AGEQMARLPL KPVYSRALIL ANQFNCLEEM LITVAMLSAR TSRNHFVSVE
501: GDHLTYLSVY RDEAKAEKNM RKWCKDNFVN SRSLKHARDI YRQIRGNVEQ MGFNVSSCGD DMLEYRKCLA ASFFLKAAQR QMDGTYRALE SGEIVHIHPS
601: SVLFRSKPEC VIFDELMQTS QKYINNLTRI DPLWLAESAL IITKQMSDFN ASCLNTTSVL SLV
101: AKRVAEECDV PLGQKVGYAV RFDDTTSSST RLKYMTDGFL LREALVDRLL SRYSVIIIDE AHERTVHTDV LLALLKKVQR ERISPLKLII MSASLDARVF
201: CDYYGGAKDF HVEGRQFDVD IFYTVHPETD YVDAALNTIF QIHSEEEEGD ILVFLTGQEE IESVERLVQE KLQHLPEDER KLLPLAIFSA LPSEQQMRVF
301: APAPIGSRKV VLATNIAETS ITIPGIRYVV DSGVVKARTY DPNKGMETLD VVPVSKAQAI QRSGRAGREG YGKSFHLYPE RDFWKLEDST KPEIKRCNLS
401: NVILQLKALG IDDIVGFDFI DKPSRSAIVK ALAELHLLGA LTDDCKLAKP AGEQMARLPL KPVYSRALIL ANQFNCLEEM LITVAMLSAR TSRNHFVSVE
501: GDHLTYLSVY RDEAKAEKNM RKWCKDNFVN SRSLKHARDI YRQIRGNVEQ MGFNVSSCGD DMLEYRKCLA ASFFLKAAQR QMDGTYRALE SGEIVHIHPS
601: SVLFRSKPEC VIFDELMQTS QKYINNLTRI DPLWLAESAL IITKQMSDFN ASCLNTTSVL SLV
001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
Arabidopsis Description
RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.