Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85017 | Canola | cytosol, plastid | 84.52 | 83.93 |
| CDY16154 | Canola | nucleus, plastid | 83.96 | 83.26 |
| Bra011023.1-P | Field mustard | nucleus | 78.66 | 81.86 |
| CDY36075 | Canola | nucleus | 76.57 | 81.45 |
| Bra024720.1-P | Field mustard | nucleus | 83.54 | 81.39 |
| CDY32702 | Canola | nucleus | 77.96 | 80.78 |
| CDY02818 | Canola | nucleus | 74.48 | 80.42 |
| CDY34567 | Canola | nucleus | 72.94 | 78.88 |
| KRH70930 | Soybean | nucleus | 69.87 | 71.06 |
| KRH75071 | Soybean | nucleus | 69.18 | 70.35 |
| VIT_01s0137g00640.t01 | Wine grape | nucleus | 67.64 | 66.8 |
| KXG22666 | Sorghum | nucleus | 64.44 | 65.53 |
| Solyc09g008120.2.1 | Tomato | nucleus | 64.71 | 65.26 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 34.17 | 64.99 |
| TraesCS7A01G156700.1 | Wheat | plastid | 64.02 | 64.38 |
| TraesCS7D01G157100.1 | Wheat | plastid | 63.88 | 64.24 |
| TraesCS7B01G060800.1 | Wheat | plastid | 63.74 | 64.1 |
| Zm00001d011963_P002 | Maize | plasma membrane | 63.6 | 63.25 |
| Os06t0192500-02 | Rice | mitochondrion | 35.7 | 62.75 |
| HORVU7Hr1G032080.3 | Barley | plastid | 63.88 | 55.92 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 64.71 | 45.67 |
| AT4G18465.1 | Thale cress | nucleus | 40.17 | 41.44 |
| AT3G62310.1 | Thale cress | nucleus | 40.86 | 40.36 |
| AT2G47250.1 | Thale cress | nucleus | 40.86 | 40.19 |
| AT1G27900.1 | Thale cress | nucleus | 36.12 | 37.0 |
| AT4G16680.2 | Thale cress | nucleus | 41.0 | 36.93 |
| AT5G14900.1 | Thale cress | cytosol | 13.11 | 31.23 |
| AT1G32490.1 | Thale cress | cytosol | 42.54 | 29.21 |
| AT2G35340.1 | Thale cress | endoplasmic reticulum, nucleus | 42.26 | 29.02 |
| AT3G26560.1 | Thale cress | nucleus | 42.96 | 26.37 |
| AT5G13010.1 | Thale cress | nucleus | 37.8 | 21.59 |
| AT2G35920.3 | Thale cress | plastid | 29.99 | 20.93 |
| AT2G01130.1 | Thale cress | nucleus | 29.99 | 19.32 |
| AT1G33390.2 | Thale cress | nucleus | 30.96 | 17.95 |
| AT1G48650.2 | Thale cress | nucleus, plastid | 29.99 | 17.83 |
| AT5G04895.1 | Thale cress | mitochondrion | 26.5 | 16.37 |
| AT1G58060.1 | Thale cress | nucleus | 32.36 | 15.9 |
| AT1G58050.1 | Thale cress | nucleus | 31.1 | 15.74 |
| AT2G30800.1 | Thale cress | nucleus | 26.78 | 14.78 |
| AT5G10370.1 | Thale cress | nucleus | 32.36 | 13.07 |
| AT4G01020.1 | Thale cress | nucleus | 31.94 | 12.81 |
| AT1G06670.1 | Thale cress | nucleus | 26.08 | 11.87 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.1.7 | Gene3D:3.40.50.300 | EntrezGene:839179 | UniProt:A0A178WGV1 | InterPro:AAA+_ATPase |
| ProteinID:AAF98584.1 | ProteinID:AEE30683.1 | ArrayExpress:AT1G26370 | EnsemblPlantsGene:AT1G26370 | RefSeq:AT1G26370 | TAIR:AT1G26370 |
| RefSeq:AT1G26370-TAIR-G | EnsemblPlants:AT1G26370.1 | TAIR:AT1G26370.1 | Unigene:At.15978 | EMBL:BT008611 | InterPro:DUF1605 |
| UniProt:F4IE66 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043484 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | RefSeq:NP_173961.3 | ProteinID:OAP16693.1 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 |
| PFAM:PF07717 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF85 | SMART:SM00382 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI000034F3E9 | SEG:seg |
Description
RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
Coordinates
chr1:-:9121443..9125578
Molecular Weight (calculated)
80520.0 Da
IEP (calculated)
8.886
GRAVY (calculated)
-0.311
Length
717 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.