Factsheet for AT1G48650.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93688	Canola	plastid	89.14	91.1
Bra018747.1-P	Field mustard	plastid	89.05	91.02
CDY40601	Canola	nucleus, plastid	88.89	90.77
VIT_17s0000g03030.t01	Wine grape	nucleus	66.17	75.5
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	50.58	74.57
KRH60477	Soybean	plastid	68.41	69.92
KRH41772	Soybean	plastid	68.16	69.84
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	67.16	67.44
TraesCS3A01G021300.1	Wheat	extracellular	66.42	64.39
TraesCS3B01G024900.1	Wheat	mitochondrion	66.33	64.15
KXG32067	Sorghum	mitochondrion	65.92	64.06
HORVU3Hr1G002800.8	Barley	mitochondrion	66.0	63.83
AT2G01130.1	Thale cress	nucleus	58.71	63.61
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	65.26	63.37
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	65.59	63.23
AT5G04895.1	Thale cress	mitochondrion	56.63	58.83
Zm00001d040082_P003	Maize	plastid	63.52	54.44
AT2G35920.3	Thale cress	plastid	36.9	43.33
AT2G47250.1	Thale cress	nucleus	19.82	32.78
AT3G62310.1	Thale cress	nucleus	19.65	32.64
AT1G27900.1	Thale cress	nucleus	18.16	31.29
AT4G18465.1	Thale cress	nucleus	17.83	30.94
AT1G26370.1	Thale cress	plastid	17.83	29.99
AT4G16680.2	Thale cress	nucleus	19.4	29.4
AT2G30800.1	Thale cress	nucleus	28.03	26.02
AT5G14900.1	Thale cress	cytosol	6.22	24.92
AT1G58060.1	Thale cress	nucleus	29.68	24.54
AT1G32490.1	Thale cress	cytosol	21.06	24.33
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	20.65	23.85
AT1G58050.1	Thale cress	nucleus	27.53	23.43
AT3G26560.1	Thale cress	nucleus	21.81	22.52
AT5G13010.1	Thale cress	nucleus	22.47	21.59
AT1G06670.1	Thale cress	nucleus	27.03	20.69
AT1G33390.2	Thale cress	nucleus	18.16	17.7
AT5G10370.1	Thale cress	nucleus	20.56	13.97
AT4G01020.1	Thale cress	nucleus	20.23	13.65

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:841287	ProteinID:AAG60124.1
ProteinID:AEE32333.1	ProteinID:AEE32334.1	ArrayExpress:AT1G48650	EnsemblPlantsGene:AT1G48650	RefSeq:AT1G48650	TAIR:AT1G48650
RefSeq:AT1G48650-TAIR-G	EnsemblPlants:AT1G48650.2	TAIR:AT1G48650.2	Unigene:At.22775	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
UniProt:F4HYJ6	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014720	RefSeq:NP_001154411.1	RefSeq:NP_175298.2	InterPro:P-loop_NTPase	PFAM:PF00035
PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF192	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	SUPFAM:SSF54768	UniParc:UPI0001A7B3E2	InterPro:dsRBD_dom	SEG:seg	:

Description

DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]

Coordinates

chr1:-:17989398..17995326

Molecular Weight (calculated)

135439.0 Da

IEP (calculated)

9.322

GRAVY (calculated)

-0.343

Length

1206 amino acids

Sequence
(BLAST)

0001: MQLYSAIFRG HIRPNAVVGA ASMFIQHNSI QLHRSPKLLL RPSSVVRSLH CRRSGGLVTH SQRSRVLCVK AARGDASSST LGIEWRAANL PYFQRQNSGY
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKKRVGR LHKKKSREVL
1201: TDEILS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.