Factsheet for AT3G62310.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76626	Canola	nucleus	93.66	94.71
Bra007671.1-P	Field mustard	nucleus	93.25	94.29
CDY11413	Canola	nucleus	93.11	94.15
AT2G47250.1	Thale cress	nucleus	92.56	92.18
TraesCS4A01G124200.2	Wheat	cytosol	86.09	86.93
TraesCS4D01G181700.1	Wheat	cytosol	86.09	86.69
TraesCS4B01G180200.1	Wheat	cytosol	85.95	86.55
HORVU4Hr1G052730.3	Barley	cytosol	85.95	86.55
KXG39505	Sorghum	cytosol	85.67	86.15
Zm00001d028923_P002	Maize	nucleus	85.26	85.85
Os03t0314100-01	Rice	cytosol, nucleus, plastid	63.64	81.91
GSMUA_Achr1P18470_001	Banana	cytosol	39.12	79.78
Zm00001d047601_P006	Maize	nucleus	84.57	79.43
AT5G14900.1	Thale cress	cytosol	31.54	76.08
AT4G18465.1	Thale cress	nucleus	42.56	44.46
AT4G16680.2	Thale cress	nucleus	46.97	42.84
AT1G26370.1	Thale cress	plastid	40.36	40.86
AT1G27900.1	Thale cress	nucleus	37.6	39.0
AT1G32490.1	Thale cress	cytosol	48.07	33.43
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	47.25	32.85
AT3G26560.1	Thale cress	nucleus	49.59	30.82
AT5G13010.1	Thale cress	nucleus	40.5	23.43
AT2G35920.3	Thale cress	plastid	32.64	23.08
AT2G01130.1	Thale cress	nucleus	30.85	20.13
AT1G33390.2	Thale cress	nucleus	33.75	19.81
AT1G48650.2	Thale cress	nucleus, plastid	32.64	19.65
AT5G04895.1	Thale cress	mitochondrion	31.13	19.47
AT2G30800.1	Thale cress	nucleus	28.37	15.86
AT1G58060.1	Thale cress	nucleus	29.75	14.8
AT1G58050.1	Thale cress	nucleus	28.51	14.61
AT5G10370.1	Thale cress	nucleus	31.27	12.79
AT4G01020.1	Thale cress	nucleus	31.13	12.65
AT1G06670.1	Thale cress	nucleus	27.27	12.56

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	EntrezGene:825404	ProteinID:AEE80337.1	ArrayExpress:AT3G62310
EnsemblPlantsGene:AT3G62310	RefSeq:AT3G62310	TAIR:AT3G62310	RefSeq:AT3G62310-TAIR-G	EnsemblPlants:AT3G62310.1	TAIR:AT3G62310.1
EMBL:AY120782	Unigene:At.4777	EMBL:BT010331	ProteinID:CAB82945.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
RefSeq:NP_191790.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	UniProt:Q9LZQ9	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI00000AB038	SEG:seg	:	:	:

Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]

Coordinates

chr3:-:23057240..23060731

Molecular Weight (calculated)

82698.5 Da

IEP (calculated)

7.338

GRAVY (calculated)

-0.419

Length

726 amino acids

Sequence
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.