Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10215 | Canola | nucleus | 59.14 | 72.59 |
| AT2G30800.1 | Thale cress | nucleus | 52.92 | 64.2 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 41.88 | 53.61 |
| KRH73592 | Soybean | nucleus | 39.34 | 53.36 |
| Solyc07g044930.2.1 | Tomato | nucleus | 40.48 | 53.21 |
| KRH14525 | Soybean | nucleus | 39.09 | 52.92 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 39.02 | 51.46 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 38.26 | 51.32 |
| EES01523 | Sorghum | nucleus | 38.45 | 50.71 |
| Os01t0767700-01 | Rice | nucleus | 39.02 | 50.29 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 35.72 | 50.0 |
| TraesCS3D01G302800.2 | Wheat | plastid | 39.02 | 48.27 |
| HORVU3Hr1G074660.7 | Barley | plastid | 38.39 | 47.49 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 38.71 | 46.92 |
| AT2G35920.3 | Thale cress | plastid | 20.18 | 30.96 |
| AT2G01130.1 | Thale cress | nucleus | 20.3 | 28.75 |
| AT2G47250.1 | Thale cress | nucleus | 12.69 | 27.43 |
| AT3G62310.1 | Thale cress | nucleus | 12.56 | 27.27 |
| AT1G48650.2 | Thale cress | nucleus, plastid | 20.69 | 27.03 |
| AT1G27900.1 | Thale cress | nucleus | 11.74 | 26.43 |
| AT4G16680.2 | Thale cress | nucleus | 13.32 | 26.38 |
| AT4G18465.1 | Thale cress | nucleus | 11.61 | 26.33 |
| AT5G04895.1 | Thale cress | mitochondrion | 19.23 | 26.1 |
| AT1G26370.1 | Thale cress | plastid | 11.87 | 26.08 |
| AT1G32490.1 | Thale cress | cytosol | 14.15 | 21.36 |
| AT2G35340.1 | Thale cress | endoplasmic reticulum, nucleus | 13.96 | 21.07 |
| AT1G58050.1 | Thale cress | nucleus | 17.64 | 19.62 |
| AT1G58060.1 | Thale cress | nucleus | 18.02 | 19.47 |
| AT5G14900.1 | Thale cress | cytosol | 3.49 | 18.27 |
| AT3G26560.1 | Thale cress | nucleus | 13.26 | 17.89 |
| AT5G13010.1 | Thale cress | nucleus | 13.52 | 16.97 |
| AT1G33390.2 | Thale cress | nucleus | 12.88 | 16.41 |
| AT5G10370.1 | Thale cress | nucleus | 13.71 | 12.17 |
| AT4G01020.1 | Thale cress | nucleus | 13.71 | 12.09 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:837177 |
| ProteinID:AAF24828.1 | ProteinID:AEE28021.1 | ArrayExpress:AT1G06670 | EnsemblPlantsGene:AT1G06670 | RefSeq:AT1G06670 | TAIR:AT1G06670 |
| RefSeq:AT1G06670-TAIR-G | EnsemblPlants:AT1G06670.1 | TAIR:AT1G06670.1 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | Unigene:At.20810 |
| EMBL:D84225 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | UniProt:F4IDQ6 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003678 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR020683 |
| InterPro:IPR036770 | InterPro:IPR036867 | Symbol:NIH | RefSeq:NP_172152.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF01424 | PFAM:PF04408 | PFAM:PF07717 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50297 | PFscan:PS51061 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 | InterPro:R3H_DEXH_helicase | InterPro:R3H_dom |
| InterPro:R3H_dom_sf | SMART:SM00393 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF48403 |
| SUPFAM:SSF52540 | SUPFAM:SSF82708 | UniParc:UPI0000162C8E | SEG:seg | : | : |
Description
NIHDExH-box ATP-dependent RNA helicase DExH2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDQ6]
Coordinates
chr1:+:2040410..2047655
Molecular Weight (calculated)
174519.0 Da
IEP (calculated)
6.767
GRAVY (calculated)
-0.566
Length
1576 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKKKKDTKH TRLCEATGAW ATKVLEDFRA SGNDSYVFEQ QLTNSERGII HQMCRTMGLR SKSNGSGEER RLSLFKGDGI SKSDKRRMYE ARNQKEKEGD
0101: GISKSYSKHR YETRFQKAGG IRKTRISPKK LKCVSFPPEA KAVLHDLFTR YPPCDGDTTG TSLGIYTTGN VNSNWKDDFF KKPHMTKHDI ENNVVSLSSR
0201: LKKERHFREI FEARSKLPIA SFRDAIISAV ESNQVVLIAG ETGCGKTTQV PQYLLDHMWH SKKEACKIIC TQPRRISAIS VSDRISWERG ETIGRTVGYK
0301: VRLQSEGGRE SSVVFCTNGI LLRVLIGKGV NSSVPDITHI IVDEIHERDS YSDFMLMILR DLLPSNPHLR LILMSATLDA ERFSEYFGGC PVVRVPGFTY
0401: PVRTFFLDDA LSVLNSDKNS HLLSAVKRDF KDEDKVSLDE AIDLAWTNDE FDCLVDLVSS EGSHEAYNYQ NSTTGLTPLM VFAGKGRVSD VCKLLSVGAD
0501: CTLKSKEGIT ALELAEKENQ FETAQIIREH AGNIQSNSQQ AQDLLDKYMA TIKPEEVDVG LIVKLMKKIC SDSKDGAILV FLPGWEEISK TKEKLLDDRF
0601: FAHSAKFIIL CLHSRVPAEE QKKVFNRPPR GCRKIVLATN IAESAVTIDD VVYVIDSGRM KEKSYDPYND VSTLQSSWVS KANAKQRAGR AGRCQAGICY
0701: HLYSKLRAAS LPEYRVPEVM RMPVDELCLQ VKMLDPNCNV NDFLQKLMDP PVAQSIENAL IILKDIGALT PEEELTELGQ KFGQLPVHPR ISKMIYFAIL
0801: VNCLDPALIL ACAADEKDPF TMPLSPGDRK KAAAAKHELA SLYGDHSDHL ATVAAFQCWK NAKASGQAKE FCSKYFISQV VMKRLDDLCR KLQGELNRHG
0901: VIPSSSSNCS LNAHDPGILR AVIAVGLYPM LGRMCPLSKN RTRSVIETIA GAKVRVPSLS NNVDMSSTKF DEALIVFDEI TRGDWGVVIR SCTVLPTIPV
1001: LLFSREIAVS TTESYDAVKS DDEEDHKVGN VGDAMDIDKE VGRPGEKIML GPENSVKVVV DRWLPFKVTA FEIAQMYILR ERLMASILFK VKHPKENLPP
1101: HLGASMYAIA SVLSYDSLAQ SSVQTVAVQP ITSVVDATSP RDDIPSTNPN ELREHDPNTT PMGSKLELAN KLGLGNMEES LPSNFADGNE QPDPNTSPVE
1201: DVSAATKQKK MQSESKRCKS LNNVDLGNIE ENFGNMEENP PSDLAIGNEQ TLPKLASNLD MGNMEENTPS DLANGNEKTE PNSANSMDLG NMEENTPSDL
1301: ANGNKKKEPK SVSKLDLGSE KVSIPSNLVN GNEQHDLNIA PGEDASAAKQ PEKKRSRSKK RKSGNNLDLG KMEKSKPSDL ANENEQTEPK SANNLDLGNM
1401: KENTPSDLAN ENEQTELRLP NNSDYGNMEE SLPLNLANGD EQPDPTTAPM EAAKQPKKKR SRSKKCKSVN NLDLGNMEEN KPSDLANGNE QKDPESVNRL
1501: DPGKEKESIP SNLVSGNEQP DSNTAPAKKP KKKKRKLANN FDSVNNMEEK MPSTNVLSQG NKSGLIEEKP SIPSDQ
0101: GISKSYSKHR YETRFQKAGG IRKTRISPKK LKCVSFPPEA KAVLHDLFTR YPPCDGDTTG TSLGIYTTGN VNSNWKDDFF KKPHMTKHDI ENNVVSLSSR
0201: LKKERHFREI FEARSKLPIA SFRDAIISAV ESNQVVLIAG ETGCGKTTQV PQYLLDHMWH SKKEACKIIC TQPRRISAIS VSDRISWERG ETIGRTVGYK
0301: VRLQSEGGRE SSVVFCTNGI LLRVLIGKGV NSSVPDITHI IVDEIHERDS YSDFMLMILR DLLPSNPHLR LILMSATLDA ERFSEYFGGC PVVRVPGFTY
0401: PVRTFFLDDA LSVLNSDKNS HLLSAVKRDF KDEDKVSLDE AIDLAWTNDE FDCLVDLVSS EGSHEAYNYQ NSTTGLTPLM VFAGKGRVSD VCKLLSVGAD
0501: CTLKSKEGIT ALELAEKENQ FETAQIIREH AGNIQSNSQQ AQDLLDKYMA TIKPEEVDVG LIVKLMKKIC SDSKDGAILV FLPGWEEISK TKEKLLDDRF
0601: FAHSAKFIIL CLHSRVPAEE QKKVFNRPPR GCRKIVLATN IAESAVTIDD VVYVIDSGRM KEKSYDPYND VSTLQSSWVS KANAKQRAGR AGRCQAGICY
0701: HLYSKLRAAS LPEYRVPEVM RMPVDELCLQ VKMLDPNCNV NDFLQKLMDP PVAQSIENAL IILKDIGALT PEEELTELGQ KFGQLPVHPR ISKMIYFAIL
0801: VNCLDPALIL ACAADEKDPF TMPLSPGDRK KAAAAKHELA SLYGDHSDHL ATVAAFQCWK NAKASGQAKE FCSKYFISQV VMKRLDDLCR KLQGELNRHG
0901: VIPSSSSNCS LNAHDPGILR AVIAVGLYPM LGRMCPLSKN RTRSVIETIA GAKVRVPSLS NNVDMSSTKF DEALIVFDEI TRGDWGVVIR SCTVLPTIPV
1001: LLFSREIAVS TTESYDAVKS DDEEDHKVGN VGDAMDIDKE VGRPGEKIML GPENSVKVVV DRWLPFKVTA FEIAQMYILR ERLMASILFK VKHPKENLPP
1101: HLGASMYAIA SVLSYDSLAQ SSVQTVAVQP ITSVVDATSP RDDIPSTNPN ELREHDPNTT PMGSKLELAN KLGLGNMEES LPSNFADGNE QPDPNTSPVE
1201: DVSAATKQKK MQSESKRCKS LNNVDLGNIE ENFGNMEENP PSDLAIGNEQ TLPKLASNLD MGNMEENTPS DLANGNEKTE PNSANSMDLG NMEENTPSDL
1301: ANGNKKKEPK SVSKLDLGSE KVSIPSNLVN GNEQHDLNIA PGEDASAAKQ PEKKRSRSKK RKSGNNLDLG KMEKSKPSDL ANENEQTEPK SANNLDLGNM
1401: KENTPSDLAN ENEQTELRLP NNSDYGNMEE SLPLNLANGD EQPDPTTAPM EAAKQPKKKR SRSKKCKSVN NLDLGNMEEN KPSDLANGNE QKDPESVNRL
1501: DPGKEKESIP SNLVSGNEQP DSNTAPAKKP KKKKRKLANN FDSVNNMEEK MPSTNVLSQG NKSGLIEEKP SIPSDQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.