Factsheet for AT3G26560.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51663	Canola	nucleus	5.22	96.83
CDX91491	Canola	nucleus	5.14	95.24
Os02t0301500-01	Rice	nucleus	43.92	93.96
CDY23338	Canola	cytosol	33.9	93.84
CDX83624	Canola	nucleus	88.53	92.74
CDY13640	Canola	nucleus	88.78	92.18
PGSC0003DMT400084916	Potato	nucleus	62.93	91.76
Bra025211.1-P	Field mustard	nucleus	90.15	89.92
Bra040091.1-P	Field mustard	nucleus	57.96	85.59
VIT_08s0056g00470.t01	Wine grape	nucleus	84.76	84.26
Solyc01g110990.2.1	Tomato	nucleus	77.48	81.46
GSMUA_Achr10P...	Banana	nucleus	67.81	81.23
Solyc07g039550.2.1	Tomato	nucleus	82.28	80.76
PGSC0003DMT400056692	Potato	nucleus	77.4	79.23
Zm00001d015893_P001	Maize	nucleus, plasma membrane	81.76	77.27
EER95349	Sorghum	nucleus	81.59	76.73
TraesCS4B01G148500.1	Wheat	nucleus	80.65	76.34
TraesCS4A01G158200.1	Wheat	nucleus	80.31	76.01
HORVU0Hr1G007860.1	Barley	nucleus	80.48	75.68
TraesCS4D01G147900.1	Wheat	nucleus	80.57	73.0
EES15324	Sorghum	nucleus	66.52	72.55
Os06t0343100-01	Rice	nucleus	67.12	72.32
TraesCS7D01G341800.1	Wheat	nucleus	65.84	71.07
TraesCS7B01G245800.1	Wheat	nucleus	65.41	71.0
Zm00001d031581_P002	Maize	nucleus	65.58	57.85
AT3G62310.1	Thale cress	nucleus	30.82	49.59
AT2G47250.1	Thale cress	nucleus	30.82	49.38
AT4G16680.2	Thale cress	nucleus	32.02	46.98
AT4G18465.1	Thale cress	nucleus	26.11	43.88
AT1G26370.1	Thale cress	plastid	26.37	42.96
AT1G27900.1	Thale cress	nucleus	24.91	41.57
AT1G32490.1	Thale cress	cytosol	35.79	40.04
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	35.79	40.04
AT5G14900.1	Thale cress	cytosol	9.59	37.21
AT5G13010.1	Thale cress	nucleus	36.73	34.18
AT2G35920.3	Thale cress	plastid	22.17	25.22
AT2G01130.1	Thale cress	nucleus	20.8	21.83
AT1G48650.2	Thale cress	nucleus, plastid	22.52	21.81
AT5G04895.1	Thale cress	mitochondrion	21.66	21.79
AT1G33390.2	Thale cress	nucleus	22.69	21.42
AT1G58060.1	Thale cress	nucleus	21.4	17.14
AT2G30800.1	Thale cress	nucleus	18.75	16.86
AT1G58050.1	Thale cress	nucleus	20.38	16.8
AT5G10370.1	Thale cress	nucleus	22.52	14.82
AT4G01020.1	Thale cress	nucleus	22.35	14.61
AT1G06670.1	Thale cress	nucleus	17.89	13.26

Protein Annotations

Gene3D:2.40.50.140	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:822264	UniProt:A0A178VG88	ProteinID:AEE77178.1
ArrayExpress:AT3G26560	EnsemblPlantsGene:AT3G26560	RefSeq:AT3G26560	TAIR:AT3G26560	RefSeq:AT3G26560-TAIR-G	EnsemblPlants:AT3G26560.1
TAIR:AT3G26560.1	ProteinID:BAB01838.1	ProteinID:CAA66825.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009506	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR003029	InterPro:IPR014001	InterPro:NA-bd_OB-fold	RefSeq:NP_189288.1
ProteinID:OAP04375.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00575	PFAM:PF04408
PFAM:PF07717	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007057	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
ScanProsite:PS00690	PFscan:PS50126	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF120
UniProt:Q38953	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF50249	SUPFAM:SSF52540	UniParc:UPI00001290D8	EMBL:X97970	SEG:seg

Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]

Coordinates

chr3:-:9749493..9753855

Molecular Weight (calculated)

134165.0 Da

IEP (calculated)

6.777

GRAVY (calculated)

-0.732

Length

1168 amino acids

Sequence
(BLAST)

0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.