CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51663	Canola	nucleus	4.76	80.95
CDY23338	Canola	cytosol	31.84	80.81
PGSC0003DMT400084916	Potato	nucleus	60.32	80.65
Os06t0343100-01	Rice	nucleus	80.95	79.98
CDX91491	Canola	nucleus	4.67	79.37
TraesCS7B01G245800.1	Wheat	nucleus	76.75	76.39
TraesCS7D01G341800.1	Wheat	nucleus	76.84	76.06
Zm00001d031581_P002	Maize	nucleus	93.09	75.3
KRG97372	Soybean	nucleus	65.17	72.18
GSMUA_Achr10P...	Banana	nucleus	64.89	71.28
CDX83624	Canola	nucleus	72.08	69.24
CDY13640	Canola	nucleus	72.27	68.8
Bra040091.1-P	Field mustard	nucleus	49.77	67.38
VIT_08s0056g00470.t01	Wine grape	nucleus	73.39	66.89
Solyc01g110990.2.1	Tomato	nucleus	69.09	66.61
AT3G26560.1	Thale cress	nucleus	72.55	66.52
Bra025211.1-P	Field mustard	nucleus	72.36	66.18
EER95349	Sorghum	nucleus	76.66	66.1
Solyc07g039550.2.1	Tomato	nucleus	73.2	65.88
KRH17401	Soybean	nucleus	73.86	65.75
KRH05918	Soybean	nucleus	73.48	65.75
PGSC0003DMT400056692	Potato	nucleus	68.63	64.42
KXG39505	Sorghum	cytosol	32.77	48.62
KXG22666	Sorghum	nucleus	29.41	44.68
OQU86123	Sorghum	nucleus	28.76	44.0
EER87951	Sorghum	nucleus, plastid	26.7	40.57
KXG30390	Sorghum	nucleus	38.94	39.87
EES02741	Sorghum	nucleus	38.66	39.58
OQU77934	Sorghum	nucleus	37.16	37.34
KXG36287	Sorghum	nucleus	36.51	30.43
KXG38358	Sorghum	nucleus	24.28	25.1
KXG37551	Sorghum	nucleus, vacuole	23.81	22.14
KXG32067	Sorghum	mitochondrion	24.37	21.03
KXG30805	Sorghum	nucleus	24.65	20.69
EES01523	Sorghum	nucleus	20.91	18.74
KXG26332	Sorghum	nucleus, plastid	22.69	17.04
OQU90279	Sorghum	nucleus	22.41	15.82

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:2.40.50.140	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8062407	UniProt:C5YI48
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	EnsemblPlants:EES15324	ProteinID:EES15324	ProteinID:EES15324.1
GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR003029	InterPro:IPR014001	InterPro:NA-bd_OB-fold	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF00575	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS50126
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF120	InterPro:S1_dom	InterPro:S1_domain
SMART:SM00316	SMART:SM00487	SMART:SM00490	SMART:SM00847	EnsemblPlantsGene:SORBI_3007G196400	SUPFAM:SSF50249
SUPFAM:SSF52540	unigene:Sbi.12846	UniParc:UPI0001A87849	RefSeq:XP_002445829.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:62821681..62825379

Molecular Weight (calculated)

118658.0 Da

IEP (calculated)

7.196

GRAVY (calculated)

-0.362

Length

1071 amino acids

Sequence
(BLAST)

0001: MAAATGAGAV SEGMRRLTQL SLVSKVCSEL ESHLGVADRV LAEFVVDLGR ASASAAAFAA ALRDHGAELP DYLVRSLHAV ITAIPDSGPA PPASRGAGAR
0101: GRVDKAAGAG ADEDQEPELN QVRRGRITRV GDAGCFVRLG AGARGREGLV HVSQMPGGRR ATVTRGQEVF VKVVSVDGAK LGLSMRDVDQ DTGRDLLPMP
0201: RNRGEEDAPR ANPPADRAGA AGRRRKGVSG IFVPDENEDK AGPAPRRPTR RMTSPERWEV KQLIASGVLD AKDYPVLDED DQGMFYQEEE VELEIELNED
0301: EPAFLRGKGR SSADMSPVRI SMNPEGSMSR AAALQSALIK ERRDIRTQEQ RGMVDAIPKD LNRSWEDPMS SGGRYLMQEL VGTGLSAQSV PEWKMTYGKA
0401: GTYGQKSRLS IQEQRQSLPI FKLKKELINA VNDNQVLVVI GETGSGKTTQ VTQYLAEAGY TTKGKIACTQ PRRVAAESIA KRVAEEVGCR VGEEVGYSIR
0501: FDDCTGPETV IKYMTDGMLL REILMDGDLS SYSVVMLDEA HERTIYTDIL FSLLKQLIKR RSDLKLIVTS ATLDAEKFSG YFFDCNIFTI PGRTFPVEIL
0601: HTKQPESDYM DAALITVLQI HLTEPEGDIL LFLTGQEEID HACERLHERM KAFGGDIPEL IICPVYSALP TEVQSKIFEP APPGKRKVVV ATNIAEASIT
0701: IDGIYYVVDP GFAKLNVYNP KLGLDSLVIT PISQASAKQR AGRAGRTGPG KCYRLYTESA YRNEIPPTTT PEIQRANLGW TVLNMKAMGI NDLLSFDFMD
0801: PPASQALISA MEQLYSLGAL DEEGLLTRLG RKMSEFPQEP PLSKMLLASV DLGCSDEILT IIAMIQTGNI FYRPREKQAQ ADRKRSNFFQ PEGDHLTLLT
0901: VYEAWKAKGF SGPWCVENFI QVNSLRRAQD VRKQLLEIMD KFKLNVISAG NNSTKIGKAL AAGFFFHAAR KDPSGGYRTL ADHQQVYIHP SSALFHQQPQ
1001: LVIYHEIVMT TKEYMREVTA VDPRWLVELA PRFYRSVDPM KISKRKRQER IEPLYDRYNE PNSWRLSKRR W

Best Arabidopsis Sequence Match ( AT3G26560.1 )
(BLAST)

0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.