CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045147_P015	Maize	nucleus	95.6	95.47
Os11t0310800-01	Rice	nucleus	91.63	91.24
TraesCS4B01G075500.1	Wheat	nucleus	89.22	89.22
TraesCS4D01G074200.1	Wheat	nucleus	88.79	88.79
TraesCS4A01G239500.2	Wheat	nucleus	88.51	88.51
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	38.87	78.51
VIT_01s0010g02780.t01	Wine grape	nucleus	66.95	73.75
KRH58751	Soybean	nucleus	71.06	71.88
Solyc05g015040.2.1	Tomato	nucleus	70.5	71.0
Bra010915.1-P	Field mustard	nucleus	70.78	70.78
CDX90112	Canola	nucleus	70.78	70.78
AT1G27900.1	Thale cress	nucleus	70.21	70.71
CDY11762	Canola	nucleus	70.35	70.45
GSMUA_Achr2P20940_001	Banana	nucleus	63.26	66.47
OQU86123	Sorghum	nucleus	37.45	37.71
KXG39505	Sorghum	cytosol	37.02	36.15
KXG22666	Sorghum	nucleus	35.32	35.32
EES15324	Sorghum	nucleus	40.57	26.7
KXG30390	Sorghum	nucleus	39.01	26.29
EES02741	Sorghum	nucleus	38.87	26.2
OQU77934	Sorghum	nucleus	38.3	25.33
EER95349	Sorghum	nucleus	41.56	23.59
KXG36287	Sorghum	nucleus	40.85	22.41
KXG38358	Sorghum	nucleus	31.06	21.14
KXG37551	Sorghum	nucleus, vacuole	29.65	18.14
KXG30805	Sorghum	nucleus	32.34	17.87
KXG32067	Sorghum	mitochondrion	29.93	17.0
EES01523	Sorghum	nucleus	26.67	15.73
OQU90279	Sorghum	nucleus	30.07	13.97
KXG26332	Sorghum	nucleus, plastid	27.94	13.81

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8064050	InterPro:AAA+_ATPase	UniProt:C5Z5C9
ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	EnsemblPlants:EER87951	ProteinID:EER87951	ProteinID:EER87951.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFAM:PF13401	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF131
SMART:SM00487	SMART:SM00490	SMART:SM00847	EnsemblPlantsGene:SORBI_3010G059500	SUPFAM:SSF52540	unigene:Sbi.16437
UniParc:UPI0001A89116	RefSeq:XP_002436584.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:4654595..4672110

Molecular Weight (calculated)

78809.8 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.318

Length

705 amino acids

Sequence
(BLAST)

001: MPSPSPPPPP VLPISEHEDV IVAAVDANPV VVVIGETGSG KSTQLSQILH RRGYTRRGAI AVTQPRRVAA VSVSRRVAQE LGVPLGDEVG YAIRFEDRTS
101: ERTCIKYLTD GVLLRESLSN PELRQYSVII LDEAHERSLN TDILLGLMKR LIKDRASDLK VLITSATLDG LKVSKFFSGC PVLNIPGTLF PVEKFYSTER
201: PTNYIESSLR TAIDIHAKEP PGDVLIFMTG KDDIDKMVSK LEERIQNLEE GSCIDALVLP LHGSLPPELQ VRVFAPAPPN CRRFIVATNV AETSLTVDGV
301: VFVIDCGYVK QRQYNPSSGM YSLDVVQISR VQADQRAGRA GRTRPGKCYR LYPISIYQNE FLEATVPEIQ RSSLAGSVLY LKSLNLPDIN ILKFDFLDPP
401: SRESLEDALR QLYLIDAIDE NGEITDVGRV MAELPLEPSL SRTLIEANEL GCLSQALTVA SILSAEITLR SASKDMDGKR KRQELPDGSG WGDHIQLLQI
501: FESWDQSGYD PRWCSDHDLQ VRSMKLSKDV RNQLCQIIKK IAKGSTDVHA RKSRKSDPDY RKLRRALCVG YGNQLAERML HHNGYHTVGY RSQLVQVHPS
601: SVLEGDEYGK FPMYVIYHEL ICTTRPYMRN ICAVEQAWVE PILKKLEKLD VNKLSGGSSA PKDSELLVEN KQVNSLKKDM DVKQSEVDSK IQAARERYLA
701: RKGKK

Best Arabidopsis Sequence Match ( AT1G27900.1 )
(BLAST)

001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.