CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	61.89	93.89
HORVU3Hr1G002800.8	Barley	mitochondrion	88.15	87.73
TraesCS3A01G021300.1	Wheat	extracellular	87.83	87.62
TraesCS3B01G024900.1	Wheat	mitochondrion	87.99	87.57
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	86.87	86.8
Zm00001d040082_P003	Maize	plastid	92.75	81.81
VIT_17s0000g03030.t01	Wine grape	nucleus	65.27	76.63
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	74.7	74.1
KRH60477	Soybean	plastid	65.11	68.47
KRH41772	Soybean	plastid	64.87	68.39
CDY40601	Canola	nucleus, plastid	63.74	66.98
Bra018747.1-P	Field mustard	plastid	63.58	66.86
CDX93688	Canola	plastid	63.58	66.86
AT1G48650.2	Thale cress	nucleus, plastid	64.06	65.92
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	63.09	65.2
KXG37551	Sorghum	nucleus, vacuole	56.49	60.85
KXG38358	Sorghum	nucleus	37.23	44.59
OQU86123	Sorghum	nucleus	18.53	32.86
KXG39505	Sorghum	cytosol	18.78	32.27
EER87951	Sorghum	nucleus, plastid	17.0	29.93
KXG22666	Sorghum	nucleus	16.68	29.36
EES01523	Sorghum	nucleus	28.04	29.12
KXG26332	Sorghum	nucleus, plastid	29.17	25.39
EES15324	Sorghum	nucleus	21.03	24.37
EES02741	Sorghum	nucleus	20.23	24.0
KXG30390	Sorghum	nucleus	20.23	24.0
OQU77934	Sorghum	nucleus	19.9	23.17
EER95349	Sorghum	nucleus	22.0	21.98
KXG36287	Sorghum	nucleus	20.71	20.0
KXG30805	Sorghum	nucleus	18.37	17.87
OQU90279	Sorghum	nucleus	18.29	14.96

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6Q2A9	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720	EnsemblPlants:KXG32067	ProteinID:KXG32067
ProteinID:KXG32067.1	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PFscan:PS50137	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF192
SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	EnsemblPlantsGene:SORBI_3003G095900	SUPFAM:SSF52540
SUPFAM:SSF54768	UniParc:UPI00081AB863	InterPro:dsRBD_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:8460027..8473643

Molecular Weight (calculated)

139408.0 Da

IEP (calculated)

9.180

GRAVY (calculated)

-0.428

Length

1241 amino acids

Sequence
(BLAST)

0001: MLLTSVLRGR VRLLRRPRPL TMPSPLFLSR NPNPSPGTTN PHLSSTPVSA AMSTTGVYVP PMRRLRSVIA STNGSLAPPP SAAAQAQQTA RTPEWLVDGR
0101: SLSPPSPPQP RRRDLPPLPR PPQPEHFRQQ SAGYARYAYD DFSEDDSDKD MDRTSVSSKG ASTLDNVDEW KWKLHMLLRN DDEQEIISRE RKDRRDFEQL
0201: AQLAERMRLH SRQYSKVVVF SKVPLPNYRS DLDDKRPQRE VSIPAGLQRE VDALLADYVA RKRTNNGNFP SSAFSRSSST DSFATDEGFF DQQDNQTSTS
0301: AVMDRIQRRK SLQLRNQQAA WQESNDGQSM MEFRRSLPAF KEKQTLLEAI SQNQVIVVSG ETGCGKTTQL PQYILESEID AARGATCSII CTQPRRISAI
0401: AVSERVAAER GEKIGESVGY KVRLEGMRGR DTRLLFCTTG VLLRRLLVDR NLKGVTHVIV DEIHERGMNE DFLLIVLKDL LPRRPELRLI LMSATLNAEL
0501: FSSYFGGAPM IHIPGFTYPV RSRFLEDILE ITGHRLTPYN QIDDYGQEKS WKMQKQSLRK RKSQIASVVE DAVDAADLRD YSSRTRDSLS CWNPDSIGFN
0601: LIENVLCHIC QKERSGAILV FMTGWDDINA LKEQLQANPL LGDPSKVLLL TCHSSMASSE QKLIFDKPEP GVRKIVLATN LAETSITIND VVFVVDCGKA
0701: KETSYDALNN TPCLLPTWIS KASARQRRGR AGRVQPGECY HLYPRSVYDA FADYQLPELL RTPLQSLCLQ IKSLRLGSIS EFLSRALQSP ESLSVQNAIE
0801: YLKVIGAFDQ NEELTVLGKH LSMLPVEPKL GKMLIFGAIF NCLDPILTIV SGLSVRDPFL TPFDKKDLAE SAKLQFSCRD YSDHLALVRA YEGWREAERD
0901: RAGYDYCWKN FLSVQTLKAI DSLRRQFLFL LKDTGLVDEN MTVCNKWSRD ENLVRAVICA GLYPGVSSVV NKEKSISLKT MEDGQVMLYS SSVNGKEAKI
1001: PFPWLVFNEK VKVNSVFLRD STAISDSILL LFGGCIKQGG LDGHLKMLGG YLEFFMNRDL ASTYLSLKSE LENLIHCKLQ NPRMNIQTSE ELLSAIRLLV
1101: TEDPCSGRFV YGRQEPRSKK AKTMFSPSSM SGGGGNGGDN AKNQLQTFLT RAGHSNPTYK TKQIKSYLFR STVEFNGMQF VGQPCANKKL AEKDAASEAL
1201: NWLTGDGGAT ITDSRGAQDA DPMPLLMQPP RRRRHSHRRR S

Best Arabidopsis Sequence Match ( AT1G48650.1 )
(BLAST)

0001: MQLYSAIFRG HIRPNAVVGA ASMFIQHNSI QLHRSPKLLL RPSSVVRSLH CRRSGGLVTH SQRSRVLCVK AARGDASSST LGIEWRAANL PYFQRQNSGY
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.