Factsheet for VIT_17s0000g03030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	60.45	78.12
KRH60477	Soybean	plastid	79.66	71.36
KRH41772	Soybean	plastid	79.09	71.03
VIT_01s0011g04360.t01	Wine grape	plastid	77.2	69.09
Bra018747.1-P	Field mustard	plastid	75.88	67.97
CDX93688	Canola	plastid	75.88	67.97
CDY40601	Canola	nucleus, plastid	75.88	67.91
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	76.82	67.61
AT1G48650.2	Thale cress	nucleus, plastid	75.5	66.17
TraesCS3A01G021300.1	Wheat	extracellular	76.92	65.35
KXG32067	Sorghum	mitochondrion	76.63	65.27
HORVU3Hr1G002800.8	Barley	mitochondrion	76.82	65.12
TraesCS3B01G024900.1	Wheat	mitochondrion	76.73	65.04
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	76.63	64.75
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	75.59	64.33
Zm00001d040082_P003	Maize	plastid	74.17	55.72
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	42.38	43.71
VIT_07s0005g01770.t01	Wine grape	nucleus	22.8	33.1
VIT_10s0003g00810.t01	Wine grape	nucleus	20.53	31.27
VIT_01s0010g02780.t01	Wine grape	nucleus	18.45	30.47
VIT_01s0137g00640.t01	Wine grape	nucleus	20.72	30.17
VIT_01s0010g02920.t01	Wine grape	nucleus	22.89	27.66
VIT_12s0028g01050.t01	Wine grape	nucleus	30.56	26.24
VIT_12s0035g00800.t01	Wine grape	nucleus	29.71	22.94
VIT_17s0000g06950.t01	Wine grape	nucleus	22.71	22.77
VIT_08s0056g00470.t01	Wine grape	nucleus	24.5	22.04
VIT_07s0005g00860.t01	Wine grape	nucleus	20.72	16.58
VIT_07s0191g00210.t01	Wine grape	nucleus	20.44	12.44

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100244105	wikigene:100244105	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1
ProteinID:CBI15516	ProteinID:CBI15516.3	UniProt:D7SJ55	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	EMBL:FN594950
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014720	EntrezGene:LOC100244105	wikigene:LOC100244105	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF192	SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
SUPFAM:SSF54768	UniParc:UPI0001BE0A96	ArrayExpress:VIT_17s0000g03030	EnsemblPlantsGene:VIT_17s0000g03030	EnsemblPlants:VIT_17s0000g03030.t01	RefSeq:XP_002277625
RefSeq:XP_002277625.2	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:-:2821592..2865059

Molecular Weight (calculated)

119205.0 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.331

Length

1057 amino acids

Sequence
(BLAST)

0001: MLIRNKDEQE VVSTEKKDRR DFEQISALAT RMGLYSCQYS RVVVFSKVPL PNYRSDLDDK RPQREVVLPF GLQREVHAHL KEYLSQKSMS RESFSDKTLS
0101: RSIGNSSVTE EGFYEQQEPL TQTSVVMERI LKRKSLQIRN QQQDWQESSE GQKMQEFRRS LPAYKEREAL LNAISQNQVV VVSGETGCGK TTQLPQYILE
0201: SEIEAARGAF CSIICTQPRR ISAMSVSERV AAERGEKLGE SVGYKVRLEG MKGRDTRLLF CTTGILLRRL LVDRNLKGVT HVIVDEIHER GMNEDFLLIV
0301: LKDLLPRRPE LRLILMSATL NAELFSSYFG GAPSIHIPGF TYPVRTHFLE NILEMTGYRL TPYNQIDDYG QEKVWKMQKQ ALRKRKSQIA SSVEDALEVA
0401: NFDAYSPRTQ DSLSCWNPDS IGFNLIEHAL CHIVKKERPG AVLVFMTGWD DINSLKDQLE AHPLLGDPSR VLLLACHGSM ASSEQRLIFD KPEDGVRKIV
0501: LATNMAETSI TINDVVFVVD CGKAKETSYD ALNNTPCLLP SWISKASARQ RRGRAGRVQP GECYHLYPKC VYDAFSDYQL PELLRTPLQS LCLQIKSLQL
0601: GSISEFLARA LQPPEPLSVQ NAIEYLKTIG ALDENENLTV LGRNLSMLPV EPKLGKMLIF GSLFNCLNPI MTVVAGLSVR DPFLMPFDKK DLAESAKALF
0701: SGRTFSDHLA LVQAYEGWKE AERQQSGYEY CWRNFLSAQT LKAIDSLRRQ FFYLLKDAGL VENNTEACNK WSHDEHLIRA VICAGLFPGI CSVVNKEKSI
0801: SLKTMEDGQV LLYSNSVNAR EPKIPYPWLV FNEKVKVNSV FLRDSTAVSD SMLLLFGGRI SRGGIDGHLK MLGGYLEFFM KPDLADTYLS LKKELEELIQ
0901: QKLLNPTLDV HTNNELLSAV RLLVSEDECN GRFVFGRQLP KSSKQAIKET SAGALLRSGG AGGDNAKGRL QTVLIRGGHQ APVYKTRQLK NNMFRSTVIF
1001: NGLQFAGQPC SSKKLAEKDA AAKALEWLMG ERQSSTEDID HMSMLLKKSK GKRRKRT

Best Arabidopsis Sequence Match ( AT1G48650.1 )
(BLAST)

0001: MQLYSAIFRG HIRPNAVVGA ASMFIQHNSI QLHRSPKLLL RPSSVVRSLH CRRSGGLVTH SQRSRVLCVK AARGDASSST LGIEWRAANL PYFQRQNSGY
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.