Factsheet for GSMUA_Achr3P20920_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	51.56	78.85
VIT_17s0000g03030.t01	Wine grape	nucleus	64.75	76.63
KXG32067	Sorghum	mitochondrion	74.1	74.7
TraesCS3A01G021300.1	Wheat	extracellular	72.18	72.59
TraesCS3B01G024900.1	Wheat	mitochondrion	72.26	72.49
HORVU3Hr1G002800.8	Barley	mitochondrion	72.26	72.49
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	70.9	71.42
KRH41772	Soybean	plastid	63.15	67.12
KRH60477	Soybean	plastid	63.31	67.12
CDY40601	Canola	nucleus, plastid	63.07	66.81
Bra018747.1-P	Field mustard	plastid	62.83	66.61
CDX93688	Canola	plastid	62.83	66.61
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	63.23	65.86
AT1G48650.2	Thale cress	nucleus, plastid	63.23	65.59
Zm00001d040082_P003	Maize	plastid	70.98	63.11
GSMUA_Achr4P07530_001	Banana	mitochondrion	57.23	61.46
GSMUA_Achr8P12550_001	Banana	cytosol	18.07	49.67
GSMUA_Achr8P12540_001	Banana	nucleus	15.91	36.05
GSMUA_Achr11P...	Banana	nucleus	9.75	32.19
GSMUA_Achr1P18470_001	Banana	cytosol	9.11	32.02
GSMUA_Achr3P12710_001	Banana	nucleus	18.47	31.82
GSMUA_Achr5P02110_001	Banana	mitochondrion	25.66	28.51
GSMUA_Achr3P24350_001	Banana	endoplasmic reticulum, vacuole	15.91	27.99
GSMUA_Achr2P20940_001	Banana	nucleus	14.79	27.57
GSMUA_Achr4P23370_001	Banana	nucleus	16.07	26.8
GSMUA_Achr6P17860_001	Banana	nucleus	28.7	25.23
GSMUA_Achr5P05110_001	Banana	nucleus	17.67	21.75
GSMUA_Achr10P...	Banana	nucleus	16.63	21.33
GSMUA_Achr3P08220_001	Banana	nucleus	16.71	19.44
GSMUA_Achr8P17640_001	Banana	nucleus	13.67	13.88

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr3G20920_001
EnsemblPlants:GSMUA_Achr3P20920_001	EnsemblPlants:GSMUA_Achr3T20920_001	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014720	UniProt:M0SGF8	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF192	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768
TMHMM:TMhelix	UniParc:UPI000295B72D	InterPro:dsRBD_dom	SEG:seg	:	:

Description

Putative Probable ATP-dependent RNA helicase DHX36 [Source:GMGC_GENE;Acc:GSMUA_Achr3G20920_001]

Coordinates

chr3:+:21965947..21980647

Molecular Weight (calculated)

141014.0 Da

IEP (calculated)

8.135

GRAVY (calculated)

-0.306

Length

1251 amino acids

Sequence
(BLAST)

0001: MLSAVVLRGC RRLTMPVARS PHLRSVYPRS TCPNPRGSLN FLNPRLLPMK TGGGAGVYVP PIPRLRSMIA SANGTLTTAR SVDYDWRDGG GQGIAVSPPP
0101: PATTSSGGDG YPSYFHQQSS HYARYAYDDY SDDESDRDVE ALPGSNKGAS SLDNVDEWKW KLSMLLRSET EQEIVSRERK DRRDYEHLAA LAERMGLCSR
0201: QYAKVVVFSK VPLPNYRPDL DDRRPQREVS IPVGLQREVD DILGEYIARK RTNRESFPSI GFSRSSSTDS FATDEGFFEQ QDLQTSTSVV MEKILRRRSL
0301: QLRNQQQTWQ DSPEGQNMLE FRRSLPAFKE REALLAAISQ NQVVVVSGET GCGKTTQLPQ YILESEIDAA RGATCSIICT QPRRISAMAV SERVAAERGE
0401: KLGESVGYKV RLEGMKGRET RLLFCTTGIL LRRLLVDRNL KGVTHVIVDE IHERGMNEDF LLIVLKDLLP RRPELRLILM SATLNAELFS SYFGGAPMIH
0501: IPHWDLPFTI CSSLFCPLNY SHLSIIALIL HSSCLLQLLG GFFFLVIGHR AQRTYKIEGR EVWIPDTLDA YAFLFSAFGF TYPVHTHFLE NVLEITGHRL
0601: TPYNQIDDYG QEKMWKMQKQ AMRRRKSQIA SVVEDALEAA DFREYCSRTR ESLSCWNPDS IGFNLIESIL CHICRKERPG AVLVFMTGWD DINSLKDQLQ
0701: ANPLLGDPTK VLLLPCHGSM ASSEQRLIFD KPENGIRKIV LATNMAETSI TINDVVFVVD CGKAKETSYD ALNNTPCLLP TWISKASTRQ RRGRAGRVQP
0801: GECYHLYPRC VYDAFADYQL PELLRTPLQS LCLQIKSLRL GSISEFLSRA LQSPEPLSVQ NAIEYLKVIG ALDDKEELTV LGRHLSMLPV EPKLGKMLIY
0901: GAIFNCLDPI LTVVAGLTVR DPFLTPFDKK DLAESAKSQF SCRDYSDHLA LVRAFDGWKD SEREHSGYEY CWKNFLSAQT LKAIDSLRKQ FLFLLKDTGL
1001: VTDSFSTCNK WSQDENLTRA VICAGLYPGV CSVVNKEKSI SLKTMEDGQV MLSSNSVNGK ESKILYPWLV FNEKVKVNSV FLRDTTAVSD SVLLLFGGNI
1101: CRGGLDGHLK MLGGYLEFFM NPDLQSTYLN LKRELEELIY FKLVNPRMDI PSSEDLLSAI RLLVAEDPCT GHQNPKYKTK QLKNNQFRAM VEFNGMQFLG
1201: QPCTNKKLAE KDAAAEALEW LQGGTSSGSR DPDPMSMMVK KKSKKQHHRR T

Best Arabidopsis Sequence Match ( AT1G48650.1 )
(BLAST)

0001: MQLYSAIFRG HIRPNAVVGA ASMFIQHNSI QLHRSPKLLL RPSSVVRSLH CRRSGGLVTH SQRSRVLCVK AARGDASSST LGIEWRAANL PYFQRQNSGY
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.