Factsheet for GSMUA_Achr4P07530_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0748800-01	Rice	mitochondrion	81.29	82.35
KXG37551	Sorghum	nucleus, vacuole	80.34	81.25
TraesCS5D01G397600.1	Wheat	nucleus	79.74	80.78
TraesCS5B01G392800.1	Wheat	nucleus	79.74	80.78
TraesCS5A01G387700.2	Wheat	golgi, nucleus	79.74	80.43
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	79.06	80.09
KRH44757	Soybean	plastid	79.74	80.02
Solyc01g006710.2.1	Tomato	mitochondrion	78.28	78.35
PGSC0003DMT400055091	Potato	mitochondrion	78.11	78.18
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	79.83	77.56
AT5G04895.1	Thale cress	mitochondrion	76.57	76.83
CDX98799	Canola	mitochondrion	75.97	76.69
Bra009414.1-P	Field mustard	mitochondrion	75.97	76.62
CDX70187	Canola	mitochondrion	75.97	76.56
KRH13104	Soybean	mitochondrion	25.06	68.22
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	61.46	57.23
GSMUA_Achr8P12550_001	Banana	cytosol	19.57	50.11
GSMUA_Achr8P12540_001	Banana	nucleus	18.03	38.04
GSMUA_Achr1P18470_001	Banana	cytosol	9.96	32.58
GSMUA_Achr3P12710_001	Banana	nucleus	20.09	32.23
GSMUA_Achr11P...	Banana	nucleus	10.13	31.13
GSMUA_Achr2P20940_001	Banana	nucleus	16.82	29.21
GSMUA_Achr3P24350_001	Banana	endoplasmic reticulum, vacuole	17.42	28.55
GSMUA_Achr4P23370_001	Banana	nucleus	18.28	28.4
GSMUA_Achr5P02110_001	Banana	mitochondrion	27.04	27.98
GSMUA_Achr6P17860_001	Banana	nucleus	30.56	25.02
GSMUA_Achr10P...	Banana	nucleus	18.54	22.15
GSMUA_Achr5P05110_001	Banana	nucleus	18.28	20.96
GSMUA_Achr3P08220_001	Banana	nucleus	18.54	20.09
GSMUA_Achr8P17640_001	Banana	nucleus	16.05	15.18
PGSC0003DMT400041647	Potato	cytosol	2.06	6.54

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr4G07530_001	EnsemblPlants:GSMUA_Achr4P07530_001	EnsemblPlants:GSMUA_Achr4T07530_001
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720
UniProt:M0SLX0	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PFscan:PS50137	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF103
SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768
UniParc:UPI0002958531	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

ATP-dependent RNA helicase DHX36, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G07530_001]

Coordinates

chr4:-:5561220..5575435

Molecular Weight (calculated)

131798.0 Da

IEP (calculated)

8.449

GRAVY (calculated)

-0.344

Length

1165 amino acids

Sequence
(BLAST)

0001: MMRRGLGFGL ASLLRPERFA ATSLGRKVGA LSFLSRRSIS STGGDVNAGC CYRWQRGFCG YAVEQFSDDE YECEFESHKP SSEANIDEWR WKLSLLLRGT
0101: EEQEIISRDK RDRRDYEQIS NLAKRMGLYS ELYGKVVVAS KVPLPNYRPD LDDKRPQREV MIPLSLQRRV EGLLQEHLDR VLLASNIVND ELGRSSSSKD
0201: VEDVDVDENQ DSLVDSSVME KILQRKSIRM RNLQRTWQDS PEGVKMLNFR NSLPAYKEKD GLLSAIARNQ VIVISGETGC GKTTQLPQYV LESEIESGRG
0301: AFCNIICTQP RRISAMAVAE RVSAERGENL GETVGYKVRL EGMKGKNTHL LFCTSGILLR RLLGDRNLNG VTHVFVDEIH ERGMNEDFLL IVLKDLLPRR
0401: RDLRLILMSA TLNAELFSNY FGGAPTIHIP GFTYPVRAQF LEDILEKTGY KLTSFNQIDD YGQEKLWKTQ RQLMPRKRKN QITALVEDAL QNSSFEGYSS
0501: RARDSLASWT PDCIGFNLIE AILCHICRKE RPGAVLVFMT GWDDISCLRD QLRAHPLLGD PNRVLVLTCH GSMATSEQMM LMSLFDQKLI FENPPPNIRK
0601: IVLATNMAEA SITINDIVFV VDCGKAKETT YDALNNTPCL LPSWISKASA RQRRGRAGRV QPGECYHLYP RCVYDAFAEY QLPELLRTPL NSLCLQIKSL
0701: QVGSIGEFLS AALQPPEPLT VQNAVEFLKM IGALDEQENL TNLGRYLSVL PVDPKLGKML IMGAVFRCLD PVLTVVSGLS VRDPFLLPQD KKDLAGTAKS
0801: RFSAKDYSDH MALVRAYEGW KDAEREGSAY EYCWRNFLSA QTLQAIHSLR KQFSFILKDS GLLDADSSIN NSLSHNQPLV RAIICSGLFP GIASVVHREK
0901: SLSFKTMDDG QVLLYANSVN AKYQTIPYPW LVFSEKVKVN TVFIRDSTGV SDSVLILFGG TLIRGEMAGH LKMLDGYIDF FMDPSLTECY WNLKAELDNL
1001: VQRKLLDPRT DIHKEGRYLM LAVQELVSGD LCEGRFVFGR ETRRTRFSGN EGNKNNIVKD GTNPKSLLQT LLMRAGHSPP KYKTKHLKTN EFRAIVEFKG
1101: MQFVGKPKKN KQLAERDAAI EALEWLTHTS DKSHQVEDDD SPLDITENML KLLNRPRRRS RRRSG

Best Arabidopsis Sequence Match ( AT5G04895.1 )
(BLAST)

0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K

Arabidopsis Description

ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.