Factsheet for GSMUA_Achr5P02110_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01523	Sorghum	nucleus	66.61	62.76
Os01t0767700-01	Rice	nucleus	67.5	62.14
TraesCS3B01G337600.3	Wheat	nucleus	65.45	61.67
TraesCS3A01G298900.1	Wheat	nucleus	63.5	60.85
TraesCS3D01G302800.2	Wheat	plastid	65.99	58.32
Zm00001d012661_P002	Maize	mitochondrion, plastid	67.23	58.23
HORVU3Hr1G074660.7	Barley	plastid	65.28	57.69
VIT_12s0028g01050.t01	Wine grape	nucleus	61.37	56.13
Solyc07g044930.2.1	Tomato	nucleus	58.79	55.21
KRH14525	Soybean	nucleus	54.53	52.75
KRH73592	Soybean	nucleus	54.35	52.67
CDY10756	Canola	nucleus	49.64	51.33
Bra021665.1-P	Field mustard	nucleus	53.2	45.9
AT2G30800.1	Thale cress	nucleus	52.66	45.65
CDX97797	Canola	nucleus	52.04	45.39
CDY29644	Canola	nucleus	52.66	45.37
CDY10215	Canola	nucleus	49.64	43.54
Bra018293.1-P	Field mustard	plasma membrane, vacuole	50.8	43.33
GSMUA_Achr8P12550_001	Banana	cytosol	14.65	36.26
AT1G06670.1	Thale cress	nucleus	50.0	35.72
GSMUA_Achr1P18470_001	Banana	cytosol	9.24	29.21
GSMUA_Achr11P...	Banana	nucleus	9.59	28.5
GSMUA_Achr3P12710_001	Banana	nucleus	17.94	27.82
GSMUA_Achr4P07530_001	Banana	mitochondrion	27.98	27.04
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	28.51	25.66
GSMUA_Achr2P20940_001	Banana	nucleus	14.83	24.89
GSMUA_Achr3P24350_001	Banana	endoplasmic reticulum, vacuole	15.54	24.61
GSMUA_Achr8P12540_001	Banana	nucleus	11.9	24.28
GSMUA_Achr4P23370_001	Banana	nucleus	15.19	22.8
GSMUA_Achr6P17860_001	Banana	nucleus	26.55	21.01
GSMUA_Achr5P05110_001	Banana	nucleus	17.23	19.09
GSMUA_Achr3P08220_001	Banana	nucleus	16.96	17.77
GSMUA_Achr10P...	Banana	nucleus	14.48	16.72
GSMUA_Achr8P17640_001	Banana	nucleus	12.88	11.77

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.1370.50	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G02110_001	EnsemblPlants:GSMUA_Achr5P02110_001	EnsemblPlants:GSMUA_Achr5T02110_001	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001374	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR036867
UniProt:M0SUZ0	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF01424	PFAM:PF04408
PFAM:PF07717	PFscan:PS51061	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF100
InterPro:R3H_DEXH_helicase	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF82708	UniParc:UPI0002966B8D	SEG:seg	:

Description

HVT1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G02110_001]

Coordinates

chr5:+:1333484..1353417

Molecular Weight (calculated)

125248.0 Da

IEP (calculated)

9.543

GRAVY (calculated)

-0.229

Length

1126 amino acids

Sequence
(BLAST)

0001: MRIRIQIWRR IRIACCCPRS LIRSLAPSLS SPIVTLVVEE GKKKKKKKKK KRDMGKKKGK GGEQQSSGVV TEATRVRIGK VLEEFRTSEA EVYTFESGLS
0101: KQERAAIHEM CRKMGMISKS SGYGERRRLS VYKSKKKNGS IKKEEEMLTC LQFSEEVKEV LQDLFLRYPP DDVEKREDAV NNSSVKVGKG QWKQDSSFCK
0201: PAMRKSDIAK KVEQLASRIN NSSQLRKIVE DRAKLPIASF KDGITSTLET NQVVLISGET GCGKTTQTPS ILCQAILRAL LLMPLNIHNI FLACKIICTQ
0301: PRRISAISVA ERISYERGET VGETVGYKIR LESKGGKQSS IMFCTNGVLL RLLISRGSNL SSAEAGRRQM EDCFQGITHV IVDEIHERDR FSDFMLAIIR
0401: DLLPSYPHMR LVLMSATIDA ERFSNYFNGC PIIQVPGFTY PVKIFYLEDV LTILKSVDGN HLNHHSLTGI SPLMVFAGKG RVEHIDTVLI ERLLRKICND
0501: SAEGAILVFL PGWDDINQTK ERLVASPYFR DQSKFLIFSL HSMIPSAEQK KVFKRPPAGA RKIILSTNIA ETAVTIDDVV YVIDSGRMKE KSYDPYNNVS
0601: TLHSSWVSKA SARQREGRAG RCQPGTCYHL YSKFRAASLP DYQVPEIKRM PIEELCLQAR YHFFLSLLLV NANLVADFLH KTLDPPVPET VRNALIVLQD
0701: IGALTHDERL TDLGKKLGSL PVHPSTSKML LFAILMNCLD PALTLACAAD YREPFILPMA PDGRKKAAIA KLELASLYES QFCSRYFVSS STMNMLCSMR
0801: KQLQNELAKN GFIPADMSSC SLNAHDPGIL RAVLMAGSYP MVGRLLPRRK NDKRAIVETP SGAKVRLHPH SSNFNLSFGK AAGCPLIIYD EITRGDGGMY
0901: IKNCSLIGPY PLLLLAMEMV VAPGNENDDE SDDDLDGSSL EEDEMETTIS PGQCGEEIMS SPDNNVSVVV DRWLRFESTA LDVAQIYCLR ERLSASILFK
1001: VKYPQAVLPP ALGTSMYAIA CILSYDGLPS VLADAVLEPQ PSGRDAADPG RPFQGRRLMG FIPPGGFLRS LISDKVQGSP SRKDRKANLI SPVSAHSISH
1101: SPVRSPFPGP GSGSAAPRIR SFKRRR

Best Arabidopsis Sequence Match ( AT2G30800.1 )
(BLAST)

0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK

Arabidopsis Description

HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.