Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10756 | Canola | nucleus | 73.52 | 87.7 |
| Bra021665.1-P | Field mustard | nucleus | 88.07 | 87.66 |
| CDX97797 | Canola | nucleus | 86.99 | 87.53 |
| CDY29644 | Canola | nucleus | 87.07 | 86.53 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 81.14 | 79.85 |
| KRH73592 | Soybean | nucleus | 52.96 | 59.21 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 55.66 | 58.73 |
| KRH14525 | Soybean | nucleus | 52.27 | 58.33 |
| Solyc07g044930.2.1 | Tomato | nucleus | 53.43 | 57.88 |
| EES01523 | Sorghum | nucleus | 51.19 | 55.65 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 50.04 | 55.32 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 50.81 | 55.23 |
| Os01t0767700-01 | Rice | nucleus | 51.27 | 54.46 |
| AT1G06670.1 | Thale cress | nucleus | 64.2 | 52.92 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 45.65 | 52.66 |
| TraesCS3D01G302800.2 | Wheat | plastid | 51.04 | 52.04 |
| HORVU3Hr1G074660.7 | Barley | plastid | 50.19 | 51.18 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 50.65 | 50.62 |
| AT2G35920.3 | Thale cress | plastid | 25.56 | 32.33 |
| AT2G47250.1 | Thale cress | nucleus | 16.47 | 29.36 |
| AT2G01130.1 | Thale cress | nucleus | 25.1 | 29.29 |
| AT3G62310.1 | Thale cress | nucleus | 15.86 | 28.37 |
| AT1G48650.2 | Thale cress | nucleus, plastid | 26.02 | 28.03 |
| AT1G27900.1 | Thale cress | nucleus | 15.01 | 27.86 |
| AT5G04895.1 | Thale cress | mitochondrion | 24.71 | 27.65 |
| AT1G26370.1 | Thale cress | plastid | 14.78 | 26.78 |
| AT4G18465.1 | Thale cress | nucleus | 14.32 | 26.76 |
| AT4G16680.2 | Thale cress | nucleus | 15.7 | 25.63 |
| AT5G14900.1 | Thale cress | cytosol | 5.31 | 22.92 |
| AT1G58060.1 | Thale cress | nucleus | 23.33 | 20.77 |
| AT1G58050.1 | Thale cress | nucleus | 22.48 | 20.61 |
| AT2G35340.1 | Thale cress | endoplasmic reticulum, nucleus | 16.47 | 20.5 |
| AT1G32490.1 | Thale cress | cytosol | 16.24 | 20.21 |
| AT3G26560.1 | Thale cress | nucleus | 16.86 | 18.75 |
| AT5G13010.1 | Thale cress | nucleus | 17.09 | 17.69 |
| AT1G33390.2 | Thale cress | nucleus | 14.86 | 15.6 |
| AT5G10370.1 | Thale cress | nucleus | 16.47 | 12.06 |
| AT4G01020.1 | Thale cress | nucleus | 16.32 | 11.86 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:817631 |
| ProteinID:AAC20715.2 | ProteinID:AAM14828.1 | ProteinID:AEC08442.1 | EMBL:AK226731 | ProteinID:ANM63248.1 | ArrayExpress:AT2G30800 |
| EnsemblPlantsGene:AT2G30800 | RefSeq:AT2G30800 | TAIR:AT2G30800 | RefSeq:AT2G30800-TAIR-G | EnsemblPlants:AT2G30800.1 | TAIR:AT2G30800.1 |
| InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | Unigene:At.19969 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 |
| UniProt:F4INY4 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | Symbol:HVT1 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR020683 | InterPro:IPR036770 |
| InterPro:IPR036867 | RefSeq:NP_001325350.1 | RefSeq:NP_850154.2 | ProteinID:OAP09980.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF01424 | PFAM:PF04408 | PFAM:PF07717 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009015 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0009071 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50297 | PFscan:PS51061 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 | InterPro:R3H_DEXH_helicase | InterPro:R3H_dom | InterPro:R3H_dom_sf |
| SMART:SM00393 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF48403 | SUPFAM:SSF52540 |
| SUPFAM:SSF82708 | EMBL:U10245 | UniParc:UPI000034EDD5 | SEG:seg | : | : |
Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
Coordinates
chr2:-:13120292..13126813
Molecular Weight (calculated)
144487.0 Da
IEP (calculated)
8.065
GRAVY (calculated)
-0.519
Length
1299 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.