Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G337600.3 | Wheat | nucleus | 93.09 | 99.25 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 89.64 | 97.19 |
| HORVU3Hr1G074660.7 | Barley | plastid | 91.37 | 91.37 |
| Os01t0767700-01 | Rice | nucleus | 76.22 | 79.39 |
| EES01523 | Sorghum | nucleus | 73.78 | 78.66 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 75.27 | 73.77 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 58.32 | 65.99 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 58.87 | 60.93 |
| Solyc07g044930.2.1 | Tomato | nucleus | 56.2 | 59.72 |
| KRH73592 | Soybean | nucleus | 53.14 | 58.26 |
| KRH14525 | Soybean | nucleus | 52.9 | 57.9 |
| CDY10756 | Canola | nucleus | 47.17 | 55.19 |
| Bra021665.1-P | Field mustard | nucleus | 52.35 | 51.11 |
| AT2G30800.1 | Thale cress | nucleus | 52.04 | 51.04 |
| CDX97797 | Canola | nucleus | 51.41 | 50.74 |
| CDY29644 | Canola | nucleus | 51.88 | 50.57 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 50.55 | 48.79 |
| CDY10215 | Canola | nucleus | 47.41 | 47.04 |
| AT1G06670.1 | Thale cress | nucleus | 48.27 | 39.02 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 26.14 | 32.36 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 16.64 | 29.4 |
| TraesCS7D01G157100.1 | Wheat | plastid | 15.31 | 27.35 |
| TraesCS3D01G025600.1 | Wheat | mitochondrion, nucleus, plastid | 26.3 | 26.97 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 14.91 | 26.95 |
| TraesCS5D01G397600.1 | Wheat | nucleus | 23.86 | 26.43 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 14.29 | 25.96 |
| TraesCS3D01G264900.1 | Wheat | plastid | 16.88 | 23.34 |
| TraesCS2D01G302700.1 | Wheat | plastid | 24.25 | 21.62 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 16.72 | 20.36 |
| TraesCS1D01G243400.1 | Wheat | nucleus | 16.72 | 20.08 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 17.03 | 20.06 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 17.5 | 17.3 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 17.66 | 16.04 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 16.01 | 15.38 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 15.31 | 14.58 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 16.33 | 12.42 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 16.8 | 12.26 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Ankyrin_rpt |
| InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 |
| InterPro:IPR002110 | InterPro:IPR014001 | InterPro:IPR020683 | InterPro:IPR036770 | InterPro:IPR036867 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01424 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50088 |
| PFscan:PS50297 | PFscan:PS51061 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 |
| InterPro:R3H_DEXH_helicase | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF48403 | SUPFAM:SSF52540 | SUPFAM:SSF82708 | EnsemblPlantsGene:TraesCS3D01G302800 | EnsemblPlants:TraesCS3D01G302800.2 |
| TIGR:cd00046 | TIGR:cd00079 | TIGR:cd00204 | TIGR:cd06007 | SEG:seg | : |
Description
No Description!
Coordinates
chr3D:+:417499081..417509420
Molecular Weight (calculated)
139215.0 Da
IEP (calculated)
8.377
GRAVY (calculated)
-0.300
Length
1274 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARISVHPNL SLHHRPLLPQ IAPPPRCPRR FPPGPPHQHT KGKATAAGSL QSGTRTGRRA APNAAAAAPP PPPLRDDGMG RKGPKGAKTN AAALTKAALA
0101: AMSEETTVRI TTVLEDFRAS DAQVHTFEPS LTNQERAAVH AMCKKMGMIS KSKGYGERRC LSVYKTKNTQ GAVKEEGPSK LGFSEEARQI LLDLFTHYPP
0201: DDAELNGDAV KNPGDKAAKI QWKTDTAFSR PAMQKHDIAK KVKMLTSKLN DTRQLRKIGE GRSKLPIASF KDHISSTLEN HQVVLISGET GCGKTTQVPQ
0301: YILDHVWGKG ESCKIICTQP RRISAMSVAE RISVERGETV GDTVGYKIRL ESKGGKNSSI MFCTNGVLLR VLIGRVTNIS KRQRAADDVI MGITHIIVDE
0401: IHERDRFSDF MLAILRDLLP MYPHLHLVLM SATIDAERFS QYFNGCPVIQ VPGHTYPVKT FYLEDVLSIL QSVGDNHLNP ETNGLGLDSV LTDDYKSSMD
0501: EAISIALVSD EFDPLIELIS IEQNPEIFNY QHSETGVTPL MVFARKGQLG DVCMLLSFGV DCSARDHDGK SALDWAQQEN QVEAYEVIKK HMDCSPAKLP
0601: EENELLKKYL ATINPEHIDT VLIERLLRKI CTDSNEGAIL VFLPGWEDIN QTRERLLASS FRDSSKFLVL SLHSMIPSSE QKKVFKRAPA GVRKIILSTN
0701: IAETAVTIDD VVFVIDSGRM KEKSYDPYNN VSTLHTSWVS RANARQREGR AGRCQPGTCY HLYSRFRAAS LPEFQIPEIK RMPIEELCLQ VKLLDPNSKI
0801: ADFLKKTLDP PVTETVKNAI TVLQDLGALT QNEQLTDLGE KLGSLPVHPS TSKMLLFGIL MNCLDPALTL ACAADYRDPF FLPMAPDERK RAAAAKVELA
0901: SLYGGYSDQL AVVAAFDCWT CAKVNGQEAL FCSKYFVASN TMNMLSSMRK QLHSELTQRG FLPADTSACS LNAKVPGIIS AVLVAGAYPM VGRLLPPRKN
1001: ARRAVLETAS GAKVRLHPHS SNFNLSFNKS SGNPLMVFDE ITRGDGGMYV KNCSVVGSYP LLLLATEIAV APPDDVSDED DEGSSGDEAG KSTLGQQKEE
1101: IMSSPDNTVS VVVDRWLRFD ATALDVAQIY CLRERLASAI LFKVKHPQDV LPPALGATMY AIACILSYDG LPGNLATKHG SGQSSTDASG SAEGRKVGFI
1201: PPGGFLMSLL SEVPPNAPHH QKSSNHPGGG SGHIRSSRAP AGRFNQSQQH PGRNSSGPGS SASQSFKRQR DAAR
0101: AMSEETTVRI TTVLEDFRAS DAQVHTFEPS LTNQERAAVH AMCKKMGMIS KSKGYGERRC LSVYKTKNTQ GAVKEEGPSK LGFSEEARQI LLDLFTHYPP
0201: DDAELNGDAV KNPGDKAAKI QWKTDTAFSR PAMQKHDIAK KVKMLTSKLN DTRQLRKIGE GRSKLPIASF KDHISSTLEN HQVVLISGET GCGKTTQVPQ
0301: YILDHVWGKG ESCKIICTQP RRISAMSVAE RISVERGETV GDTVGYKIRL ESKGGKNSSI MFCTNGVLLR VLIGRVTNIS KRQRAADDVI MGITHIIVDE
0401: IHERDRFSDF MLAILRDLLP MYPHLHLVLM SATIDAERFS QYFNGCPVIQ VPGHTYPVKT FYLEDVLSIL QSVGDNHLNP ETNGLGLDSV LTDDYKSSMD
0501: EAISIALVSD EFDPLIELIS IEQNPEIFNY QHSETGVTPL MVFARKGQLG DVCMLLSFGV DCSARDHDGK SALDWAQQEN QVEAYEVIKK HMDCSPAKLP
0601: EENELLKKYL ATINPEHIDT VLIERLLRKI CTDSNEGAIL VFLPGWEDIN QTRERLLASS FRDSSKFLVL SLHSMIPSSE QKKVFKRAPA GVRKIILSTN
0701: IAETAVTIDD VVFVIDSGRM KEKSYDPYNN VSTLHTSWVS RANARQREGR AGRCQPGTCY HLYSRFRAAS LPEFQIPEIK RMPIEELCLQ VKLLDPNSKI
0801: ADFLKKTLDP PVTETVKNAI TVLQDLGALT QNEQLTDLGE KLGSLPVHPS TSKMLLFGIL MNCLDPALTL ACAADYRDPF FLPMAPDERK RAAAAKVELA
0901: SLYGGYSDQL AVVAAFDCWT CAKVNGQEAL FCSKYFVASN TMNMLSSMRK QLHSELTQRG FLPADTSACS LNAKVPGIIS AVLVAGAYPM VGRLLPPRKN
1001: ARRAVLETAS GAKVRLHPHS SNFNLSFNKS SGNPLMVFDE ITRGDGGMYV KNCSVVGSYP LLLLATEIAV APPDDVSDED DEGSSGDEAG KSTLGQQKEE
1101: IMSSPDNTVS VVVDRWLRFD ATALDVAQIY CLRERLASAI LFKVKHPQDV LPPALGATMY AIACILSYDG LPGNLATKHG SGQSSTDASG SAEGRKVGFI
1201: PPGGFLMSLL SEVPPNAPHH QKSSNHPGGG SGHIRSSRAP AGRFNQSQQH PGRNSSGPGS SASQSFKRQR DAAR
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Arabidopsis Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.