Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G190100.1 | Wheat | nucleus | 97.37 | 98.04 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 97.48 | 93.98 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 96.22 | 92.05 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 80.76 | 84.18 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 64.03 | 83.62 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 58.59 | 79.49 |
| OQU90279 | Sorghum | nucleus | 65.69 | 75.61 |
| Zm00001d022176_P002 | Maize | nucleus | 72.22 | 71.97 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 43.64 | 61.85 |
| PGSC0003DMT400041805 | Potato | nucleus | 47.54 | 51.17 |
| KRG97543 | Soybean | nucleus, plastid | 50.29 | 50.78 |
| KRH31333 | Soybean | nucleus, plastid | 49.89 | 50.17 |
| Solyc11g010310.1.1 | Tomato | nucleus | 48.45 | 49.62 |
| Solyc04g014210.2.1 | Tomato | nucleus | 49.03 | 49.48 |
| PGSC0003DMT400060759 | Potato | nucleus | 48.68 | 49.16 |
| Bra006057.1-P | Field mustard | plastid | 46.56 | 46.32 |
| AT5G10370.1 | Thale cress | nucleus | 47.02 | 46.25 |
| CDX81170 | Canola | plastid | 46.51 | 46.06 |
| CDX78376 | Canola | plastid | 46.28 | 45.99 |
| AT4G01020.1 | Thale cress | nucleus | 46.96 | 45.89 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 45.13 | 45.37 |
| CDX69841 | Canola | plastid | 45.59 | 45.05 |
| Bra009038.1-P | Field mustard | plastid | 45.59 | 45.05 |
| CDX96996 | Canola | nucleus | 45.48 | 44.88 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 12.89 | 31.21 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 12.6 | 31.21 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 12.43 | 30.96 |
| TraesCS7D01G157100.1 | Wheat | plastid | 11.8 | 28.89 |
| TraesCS3D01G264900.1 | Wheat | plastid | 13.63 | 25.84 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 13.92 | 23.23 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 14.15 | 22.83 |
| TraesCS1D01G243400.1 | Wheat | nucleus | 13.69 | 22.53 |
| TraesCS5D01G397600.1 | Wheat | nucleus | 14.6 | 22.17 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 12.89 | 21.87 |
| TraesCS3D01G025600.1 | Wheat | mitochondrion, nucleus, plastid | 13.8 | 19.4 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 14.03 | 19.01 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 14.38 | 17.89 |
| TraesCS3D01G302800.2 | Wheat | plastid | 12.26 | 16.8 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 12.6 | 16.59 |
| TraesCS2D01G302700.1 | Wheat | plastid | 12.94 | 15.82 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:IPR013087 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 |
| PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS50089 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | InterPro:RBD_domain_sf | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54928 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:TraesCS2D01G171200 | EnsemblPlants:TraesCS2D01G171200.2 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2D:+:115089543..115098987
Molecular Weight (calculated)
196116.0 Da
IEP (calculated)
7.028
GRAVY (calculated)
-0.220
Length
1746 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRQSNHCRPF RPPDWGSPPP HCRPHHQQSH RQPQSAPRFA VILFRAGPNI STPTATEIDA LVADLPSPPP DNLSVFSSGR DAARLLFRFL PAAAAAAREL
0101: WSLRLEGLHL LTPYLPNAAL AAHAFPLIAS LFASHASRLL DTDLVSRSAA RSAELAASIQ SLEHRLRSRN SVRDFDQLHL QKKTLEAEKD LVDAKIAEYK
0201: ASMSSIRRAM LRGTDDEEEE GVDVFGIGER EDVDFARLHM MMLRECRRLN EGLPIYAYRR KILNHIFNNQ VMILIGETGS GKSTQLVQFL ADSGLAANGS
0301: IVCTQPRKIA ATSLARRVDE ESNGCYEDNF VLSYSTFLNS QDLNSKIIFC TDSCLLHHCM NDTGLDGISY IIVDEAHERS LNTDLLLALI KKKLLDRLDL
0401: HLIIMSATAD ADKLADYFYG CQTFHVKGRN FPVEINYVPD VSVEASSNAV PNSMCDACAT ASYVNDVVRM VSIIHKNEEE GAVLAFLTSQ LEVEWACENF
0501: SDASAVVLPM HGKLSHVEQS RVFKSYPGKR KIIFCTNMAE TSLTIKEVKY VVDSGLAKES RFVPSSGLNV LKVNWISQSS ANQRAGRAGR TGAGKCYRLY
0601: SEADFSMMDV HQEPEIRKVH LGTAVLRILA LGVKDARKFE FVDAPNPEAI SMAVKNLEQL GAVKHRLNCF ELTDTGRYLV KLGIEPRLGK IMLDCFDVGL
0701: RKEGVVLAAV MANSSSIFCR VGTDEEKHKA DLQKVRLCHR DGDLFTLLAV YKKWEDGHDN RNMWCWQNSI NAKTMRRCQE TISELENCLK HELNIIIPSY
0801: WRWNPEAPTV HDKDLKRIIL SSLTGNLAMF LGHERFGYQV ISTGQVVNLH PSSSLLNYGI KPEWVVFTEI LSVPNQYLVC VTAVDHDALY TIHPVSFIQH
0901: LEEQKLQIKV ISGLGTNLLR RFCGKYGQNQ QKIISRLKED CRDDRITVEI NFQNNEVVLF ATEQNMEKVF CTVNSALKCE GKILRNECLE RNLFPGRPGS
1001: SPIALFGSGA EIKHLELGGR YLTVEVLHQN AHDIDDKELI FLVDSIVSGV ANFHKSTGSF RIASDGIKWG KFTFLKPENA EDAVSKLNGI EFNGSSLKLV
1101: PVCTSDNRGL PFPAVRAKLC WPRRYSSGRA LVTCASGEAE FVVNDCFALG IGGRYIKCRV STKYENCVFA EGIPMHVTEP ELYDAFRSTT ARRILNIRLL
1201: RVKGNAIASP SVSTCEEELV REISPFMPNK SFPGQNFRVE VFPPEENDSL TRATITFDGS LHREAARALD HLEGHFLPCC QPWQIIQCNH VFHSTLSCPV
1301: RVYNVISQEV ASLLESFQSQ KGVSYNFEKT ENGIFRLKLT ANATKTIADL RRPLEILMKG KTINHPDLTL SAVQLLLSRD GVAHLKSIEQ ETGTYIMYDR
1401: QSLNIKVFGH QEQMAAAEVK LVHALRQLLE KKPLEICLRG HNLPPDLMKK TVENFGVDLE GFNKEMPEIK VELHQHRHLL KVWGSKEDKR RVERMIFELA
1501: SFKHSSLVQL ASENVGGKED NQRVDYSEPS EDACPICLCE IEDPFRLESC GHMFCLACLM DQCESAMKSH DGFPICCLKT GCKEPLLVVD LKHLLSNEKL
1601: EDLFRASLRA FVASRAGMYR FCPTPDCQSI YQVAAPDAET KPFSCGACYV EICTKCHFEY HPFISCEAYK EYKEDPDSTL LEWRKGKANV KSCPSCGYTI
1701: EKADGCNHVE CRCGSHICWV CLENFRSSEE CYGHLRSVHQ SFVDIV
0101: WSLRLEGLHL LTPYLPNAAL AAHAFPLIAS LFASHASRLL DTDLVSRSAA RSAELAASIQ SLEHRLRSRN SVRDFDQLHL QKKTLEAEKD LVDAKIAEYK
0201: ASMSSIRRAM LRGTDDEEEE GVDVFGIGER EDVDFARLHM MMLRECRRLN EGLPIYAYRR KILNHIFNNQ VMILIGETGS GKSTQLVQFL ADSGLAANGS
0301: IVCTQPRKIA ATSLARRVDE ESNGCYEDNF VLSYSTFLNS QDLNSKIIFC TDSCLLHHCM NDTGLDGISY IIVDEAHERS LNTDLLLALI KKKLLDRLDL
0401: HLIIMSATAD ADKLADYFYG CQTFHVKGRN FPVEINYVPD VSVEASSNAV PNSMCDACAT ASYVNDVVRM VSIIHKNEEE GAVLAFLTSQ LEVEWACENF
0501: SDASAVVLPM HGKLSHVEQS RVFKSYPGKR KIIFCTNMAE TSLTIKEVKY VVDSGLAKES RFVPSSGLNV LKVNWISQSS ANQRAGRAGR TGAGKCYRLY
0601: SEADFSMMDV HQEPEIRKVH LGTAVLRILA LGVKDARKFE FVDAPNPEAI SMAVKNLEQL GAVKHRLNCF ELTDTGRYLV KLGIEPRLGK IMLDCFDVGL
0701: RKEGVVLAAV MANSSSIFCR VGTDEEKHKA DLQKVRLCHR DGDLFTLLAV YKKWEDGHDN RNMWCWQNSI NAKTMRRCQE TISELENCLK HELNIIIPSY
0801: WRWNPEAPTV HDKDLKRIIL SSLTGNLAMF LGHERFGYQV ISTGQVVNLH PSSSLLNYGI KPEWVVFTEI LSVPNQYLVC VTAVDHDALY TIHPVSFIQH
0901: LEEQKLQIKV ISGLGTNLLR RFCGKYGQNQ QKIISRLKED CRDDRITVEI NFQNNEVVLF ATEQNMEKVF CTVNSALKCE GKILRNECLE RNLFPGRPGS
1001: SPIALFGSGA EIKHLELGGR YLTVEVLHQN AHDIDDKELI FLVDSIVSGV ANFHKSTGSF RIASDGIKWG KFTFLKPENA EDAVSKLNGI EFNGSSLKLV
1101: PVCTSDNRGL PFPAVRAKLC WPRRYSSGRA LVTCASGEAE FVVNDCFALG IGGRYIKCRV STKYENCVFA EGIPMHVTEP ELYDAFRSTT ARRILNIRLL
1201: RVKGNAIASP SVSTCEEELV REISPFMPNK SFPGQNFRVE VFPPEENDSL TRATITFDGS LHREAARALD HLEGHFLPCC QPWQIIQCNH VFHSTLSCPV
1301: RVYNVISQEV ASLLESFQSQ KGVSYNFEKT ENGIFRLKLT ANATKTIADL RRPLEILMKG KTINHPDLTL SAVQLLLSRD GVAHLKSIEQ ETGTYIMYDR
1401: QSLNIKVFGH QEQMAAAEVK LVHALRQLLE KKPLEICLRG HNLPPDLMKK TVENFGVDLE GFNKEMPEIK VELHQHRHLL KVWGSKEDKR RVERMIFELA
1501: SFKHSSLVQL ASENVGGKED NQRVDYSEPS EDACPICLCE IEDPFRLESC GHMFCLACLM DQCESAMKSH DGFPICCLKT GCKEPLLVVD LKHLLSNEKL
1601: EDLFRASLRA FVASRAGMYR FCPTPDCQSI YQVAAPDAET KPFSCGACYV EICTKCHFEY HPFISCEAYK EYKEDPDSTL LEWRKGKANV KSCPSCGYTI
1701: EKADGCNHVE CRCGSHICWV CLENFRSSEE CYGHLRSVHQ SFVDIV
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.