Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU90279 | Sorghum | nucleus | 78.14 | 90.24 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 56.05 | 76.3 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 71.58 | 72.32 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 54.57 | 72.26 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 71.97 | 72.22 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 68.61 | 71.76 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 54.62 | 71.58 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 68.49 | 71.43 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 65.64 | 70.73 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 69.86 | 69.78 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 67.98 | 69.73 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 71.75 | 69.41 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 71.75 | 68.88 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 43.66 | 62.09 |
| PGSC0003DMT400041805 | Potato | nucleus | 47.2 | 50.99 |
| KRG97543 | Soybean | nucleus, plastid | 49.6 | 50.26 |
| PGSC0003DMT400060759 | Potato | nucleus | 49.03 | 49.68 |
| Solyc04g014210.2.1 | Tomato | nucleus | 48.97 | 49.6 |
| KRH31333 | Soybean | nucleus, plastid | 48.97 | 49.42 |
| Solyc11g010310.1.1 | Tomato | nucleus | 48.06 | 49.38 |
| Bra006057.1-P | Field mustard | plastid | 45.78 | 45.7 |
| CDX81170 | Canola | plastid | 45.89 | 45.6 |
| CDX78376 | Canola | plastid | 45.72 | 45.59 |
| AT5G10370.1 | Thale cress | nucleus | 46.12 | 45.52 |
| AT4G01020.1 | Thale cress | nucleus | 46.12 | 45.22 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 44.52 | 44.91 |
| CDX96996 | Canola | nucleus | 45.26 | 44.83 |
| CDX69841 | Canola | plastid | 45.09 | 44.71 |
| Bra009038.1-P | Field mustard | plastid | 45.03 | 44.65 |
| Zm00001d028923_P002 | Maize | nucleus | 12.27 | 29.82 |
| Zm00001d045376_P001 | Maize | cytosol | 5.59 | 29.7 |
| Zm00001d045147_P015 | Maize | nucleus | 11.93 | 29.6 |
| Zm00001d011963_P002 | Maize | plasma membrane | 12.16 | 29.54 |
| Zm00001d049980_P001 | Maize | plasma membrane | 11.19 | 28.08 |
| Zm00001d047601_P006 | Maize | nucleus | 12.27 | 27.81 |
| Zm00001d032735_P001 | Maize | plastid | 13.07 | 22.15 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 14.78 | 21.6 |
| Zm00001d019056_P001 | Maize | nucleus | 2.45 | 21.5 |
| Zm00001d039380_P001 | Maize | nucleus | 11.42 | 21.12 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 13.93 | 19.74 |
| Zm00001d006459_P003 | Maize | plastid | 14.5 | 18.87 |
| Zm00001d031581_P002 | Maize | nucleus | 14.16 | 18.73 |
| Zm00001d017967_P003 | Maize | nucleus | 12.9 | 17.67 |
| Zm00001d040082_P003 | Maize | plastid | 14.16 | 17.63 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 11.99 | 16.15 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 12.9 | 15.87 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | UniProt:A0A1D6IJX7 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | GO:GO:0046872 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom |
| InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR013087 | InterPro:IPR014001 | ProteinID:ONM59736.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 | PFAM:PF04408 | PFAM:PF07717 |
| PFAM:PF13445 | ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS50089 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | InterPro:RBD_domain_sf | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54928 | SUPFAM:SSF57850 | UniParc:UPI000842B708 |
| EnsemblPlantsGene:Zm00001d022176 | EnsemblPlants:Zm00001d022176_P002 | EnsemblPlants:Zm00001d022176_T002 | InterPro:Znf-RING_LisH | InterPro:Znf_C2H2_type | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
ATP-dependent RNA helicase DEAH12 chloroplastic
Coordinates
chr7:-:171740661..171751645
Molecular Weight (calculated)
195898.0 Da
IEP (calculated)
7.224
GRAVY (calculated)
-0.175
Length
1752 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLRSQDRRPF RPPDRAPRPP HPHRDQHNHN EHRYQPLSHP HIDRRYSNEH RYQPRGQHQR GCHVQPPLRP SQFEVFLVRP GPDLSAPTAI EVEALLAGLP
0101: SPAPASISVQ SSGRHAARLV FTSIPAAAAA ARELWALRLE GLHLLTLDLP HPALAAHASP LIASLFASHA SRLLDSDIMV LSAARSAELE ASVRDVKQRL
0201: GSPNRFRDFH QLDLEKKTLE SEKEFVDSKI AEYKEAMWSI QRAMLRGSGD KEEGVDLFAA VDDGEVDFVK VHMMLLRECR RLKEGLPIYA YRRRILNHIF
0301: ANQVMILIGE TGSGKSTQLV QFLADSGVAG GGSIICTQPR KLAAISLAHR VDEESKGCYG DSSVLSYSTL LSSQGFGTKI IFTTDSCLLH YCMSDVNLDG
0401: ISYIIIDEAH ERSLNTDLLL AMIKKKLLDR LDLRLIIMSA TADADRLAEY FYGCQIFHVR GRTFPVEIKY VPDVSAEASL NSVPSISSVA SSTASYVTDV
0501: VQMVNIIHKN EEEGAILAFL TSQLEVEWAC ETFSDPNAVV LPMHGKLSSL EQNLVFKSYP GKRKIIFCTN IAETSLTIKD VKYVVDCGLA KEYRFVPTSG
0601: LNVLKVNWIS QSSANQRAGR AGRTGAGKCY RLYPESDFGM MEVHQEPEIR KVHLGTAVLR ILALGVTDVK CFEFIDAPDP EAIAMAVNNL EQLGAIECKR
0701: SGFELTDIGH DLVKLGIEPR LGKIMLDCFS YGLMKEGLVL ASVMANASSI FCRVGTNEEK YKADRLKVPF CHPDGDLFTS LAVYKKWETG YGNKNTWCWQ
0801: NSINAKTLRR CQETISELEK CLKHELNIIV PSYWSWNPEK PTMHDTSLKK IILSSLRGNL AMFSGHENLG YKVISAGQRV QLHPSCSLFI YGSKPEWVVF
0901: SEILSAVNQY LVCVTAVGLN EVLTVHPMSF IKQLEESKLQ RKVITGIGNK SLRRFCGKSG QNLQNIISLL RKDCRDDHIM VDLDFSSSEV LLFAKEHDME
1001: KVFCKVNYAL ELEAKLLRDE CDERRPGSST IALFGSGAEI KHLELGKRYL TVEILHQNAR VIDEKELVCL VDSLVPGIAN FHKTGNFQTN LDETKWGRFT
1101: FLKPDYAEDA ISKLNGIEFH GSLLKVSPVS IYSHSGLPFP AVRAKVSWPR KASRGVALVT CASGEAEFIV KDCFALGVGG RYVNCEVSNR YANCVFVTGI
1201: PLHVTEPELY DAFHSTTTRR ILDIRLLRGQ PTASSSVSEC TEALMRAISL FMPNRNFPCQ KFRVQVFPPE EKDLMMKATI TFDGSFHREA ARALDHLQGS
1301: VLPCCLPWQI IQCEHVFHST VSCPMRIYNV ISQDVGALLE SFRSQKGVAY NLEKNENGNF RVKLTANATK TIADLRRPLE LLMKGKIINH PDLMLSTVQL
1401: LWSRDGMEQL RSVERETGTY ILYDRQSLNI KIFGSTDNVA AAEEKLVHAL VQLHEKKPLE VCLRGRNLPP NLMKEVIVKF GADLEGLKNE VPAVDLQLNT
1501: RRQTLYVRGS KEDKQRVEGM ISELITSSDH NAQLSSENAC PICLCELEDP FKLESCGHMF CLACLVDQCE SAMKSQDGFP LRCLESGCNK LFLLADLRSL
1601: LPDKLDELFR ASLNAFVASS AGLYRFCPTP DCTSIYQVAA AGAQGDRPFV CGACSVETCT KCHLEYHPFI SCEAYKEYKA DPDATMLEWR KGKENVKNCP
1701: SCGFTIEKSE GCNHVECRCG SHICWNCLEN FKSSEECYGH LRSVHLSYAD LM
0101: SPAPASISVQ SSGRHAARLV FTSIPAAAAA ARELWALRLE GLHLLTLDLP HPALAAHASP LIASLFASHA SRLLDSDIMV LSAARSAELE ASVRDVKQRL
0201: GSPNRFRDFH QLDLEKKTLE SEKEFVDSKI AEYKEAMWSI QRAMLRGSGD KEEGVDLFAA VDDGEVDFVK VHMMLLRECR RLKEGLPIYA YRRRILNHIF
0301: ANQVMILIGE TGSGKSTQLV QFLADSGVAG GGSIICTQPR KLAAISLAHR VDEESKGCYG DSSVLSYSTL LSSQGFGTKI IFTTDSCLLH YCMSDVNLDG
0401: ISYIIIDEAH ERSLNTDLLL AMIKKKLLDR LDLRLIIMSA TADADRLAEY FYGCQIFHVR GRTFPVEIKY VPDVSAEASL NSVPSISSVA SSTASYVTDV
0501: VQMVNIIHKN EEEGAILAFL TSQLEVEWAC ETFSDPNAVV LPMHGKLSSL EQNLVFKSYP GKRKIIFCTN IAETSLTIKD VKYVVDCGLA KEYRFVPTSG
0601: LNVLKVNWIS QSSANQRAGR AGRTGAGKCY RLYPESDFGM MEVHQEPEIR KVHLGTAVLR ILALGVTDVK CFEFIDAPDP EAIAMAVNNL EQLGAIECKR
0701: SGFELTDIGH DLVKLGIEPR LGKIMLDCFS YGLMKEGLVL ASVMANASSI FCRVGTNEEK YKADRLKVPF CHPDGDLFTS LAVYKKWETG YGNKNTWCWQ
0801: NSINAKTLRR CQETISELEK CLKHELNIIV PSYWSWNPEK PTMHDTSLKK IILSSLRGNL AMFSGHENLG YKVISAGQRV QLHPSCSLFI YGSKPEWVVF
0901: SEILSAVNQY LVCVTAVGLN EVLTVHPMSF IKQLEESKLQ RKVITGIGNK SLRRFCGKSG QNLQNIISLL RKDCRDDHIM VDLDFSSSEV LLFAKEHDME
1001: KVFCKVNYAL ELEAKLLRDE CDERRPGSST IALFGSGAEI KHLELGKRYL TVEILHQNAR VIDEKELVCL VDSLVPGIAN FHKTGNFQTN LDETKWGRFT
1101: FLKPDYAEDA ISKLNGIEFH GSLLKVSPVS IYSHSGLPFP AVRAKVSWPR KASRGVALVT CASGEAEFIV KDCFALGVGG RYVNCEVSNR YANCVFVTGI
1201: PLHVTEPELY DAFHSTTTRR ILDIRLLRGQ PTASSSVSEC TEALMRAISL FMPNRNFPCQ KFRVQVFPPE EKDLMMKATI TFDGSFHREA ARALDHLQGS
1301: VLPCCLPWQI IQCEHVFHST VSCPMRIYNV ISQDVGALLE SFRSQKGVAY NLEKNENGNF RVKLTANATK TIADLRRPLE LLMKGKIINH PDLMLSTVQL
1401: LWSRDGMEQL RSVERETGTY ILYDRQSLNI KIFGSTDNVA AAEEKLVHAL VQLHEKKPLE VCLRGRNLPP NLMKEVIVKF GADLEGLKNE VPAVDLQLNT
1501: RRQTLYVRGS KEDKQRVEGM ISELITSSDH NAQLSSENAC PICLCELEDP FKLESCGHMF CLACLVDQCE SAMKSQDGFP LRCLESGCNK LFLLADLRSL
1601: LPDKLDELFR ASLNAFVASS AGLYRFCPTP DCTSIYQVAA AGAQGDRPFV CGACSVETCT KCHLEYHPFI SCEAYKEYKA DPDATMLEWR KGKENVKNCP
1701: SCGFTIEKSE GCNHVECRCG SHICWNCLEN FKSSEECYGH LRSVHLSYAD LM
0001: MRNSFPPSDG GRSTTDRRQQ SFPSSSTNRY NSRSAQSSPP LNHCTTWNQQ HSQYHNTNFP PNYRRDRAPS SGFSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
0201: RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
0301: DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
0401: TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
0501: IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
0601: SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
0701: LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
0801: DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
0901: GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1001: IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1101: AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201: YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1301: FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1401: LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501: PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1601: PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1701: ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
0101: SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
0201: RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
0301: DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
0401: TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
0501: IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
0601: SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
0701: LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
0801: DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
0901: GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1001: IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1101: AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201: YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1301: FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1401: LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501: PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1601: PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1701: ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
Arabidopsis Description
ATP-dependent RNA helicase DEAH11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P0CE10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.