Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15324 | Sorghum | nucleus | 75.3 | 93.09 |
| PGSC0003DMT400084916 | Potato | nucleus | 48.64 | 80.4 |
| CDY23338 | Canola | cytosol | 25.6 | 80.33 |
| Os06t0343100-01 | Rice | nucleus | 63.82 | 77.95 |
| CDY51663 | Canola | nucleus | 3.63 | 76.19 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 60.95 | 75.0 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 61.1 | 74.77 |
| CDX91491 | Canola | nucleus | 3.55 | 74.6 |
| KRG97372 | Soybean | nucleus | 52.57 | 71.98 |
| GSMUA_Achr10P... | Banana | nucleus | 51.66 | 70.15 |
| CDX83624 | Canola | nucleus | 57.85 | 68.7 |
| CDY13640 | Canola | nucleus | 58.01 | 68.27 |
| Bra040091.1-P | Field mustard | nucleus | 39.58 | 66.25 |
| Solyc01g110990.2.1 | Tomato | nucleus | 55.29 | 65.89 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 58.31 | 65.7 |
| Bra025211.1-P | Field mustard | nucleus | 58.08 | 65.67 |
| AT3G26560.1 | Thale cress | nucleus | 57.85 | 65.58 |
| Solyc07g039550.2.1 | Tomato | nucleus | 58.46 | 65.04 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 60.57 | 64.89 |
| KRH17401 | Soybean | nucleus | 58.91 | 64.84 |
| KRH05918 | Soybean | nucleus | 58.61 | 64.83 |
| PGSC0003DMT400056692 | Potato | nucleus | 54.98 | 63.8 |
| Zm00001d028923_P002 | Maize | nucleus | 26.06 | 47.85 |
| Zm00001d049980_P001 | Maize | plasma membrane | 24.77 | 46.99 |
| Zm00001d047601_P006 | Maize | nucleus | 26.28 | 45.02 |
| Zm00001d011963_P002 | Maize | plasma membrane | 23.64 | 43.41 |
| Zm00001d045147_P015 | Maize | nucleus | 21.68 | 40.65 |
| Zm00001d045376_P001 | Maize | cytosol | 8.01 | 32.12 |
| Zm00001d039380_P001 | Maize | nucleus | 20.92 | 29.25 |
| Zm00001d006459_P003 | Maize | plastid | 29.38 | 28.9 |
| Zm00001d032735_P001 | Maize | plastid | 19.11 | 24.47 |
| Zm00001d019056_P001 | Maize | nucleus | 3.4 | 22.5 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 19.18 | 21.18 |
| Zm00001d017967_P003 | Maize | nucleus | 19.94 | 20.64 |
| Zm00001d040082_P003 | Maize | plastid | 19.34 | 18.19 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 18.43 | 17.13 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 16.69 | 17.0 |
| Zm00001d022176_P002 | Maize | nucleus | 18.73 | 14.16 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:17.1.1.4 | Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | UniProt:A0A1D6KJR0 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR003029 | InterPro:IPR014001 | InterPro:NA-bd_OB-fold |
| ProteinID:ONM03169.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00575 | PFAM:PF04408 |
| PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS50126 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 |
| PANTHER:PTHR18934:SF120 | InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF50249 | SUPFAM:SSF52540 | UniParc:UPI0008436303 | EnsemblPlantsGene:Zm00001d031581 | EnsemblPlants:Zm00001d031581_P002 |
| EnsemblPlants:Zm00001d031581_T002 | SEG:seg | : | : | : | : |
Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Coordinates
chr1:+:195388615..195402490
Molecular Weight (calculated)
147107.0 Da
IEP (calculated)
7.895
GRAVY (calculated)
-0.392
Length
1324 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMGHGDVSFI RILEELRLHV VASTVYVLAE PTSRNLESNK KSQVQQKVVK KLPVSDLRGK LSGVASQRPQ LSSTVQVPKP VKEVIKSNKP VQKRDPAPTT
0101: APPDIKKPSA PAPVPAPSAL PKQSQNKIDA SLDSLLKSLD LEKYLINFQA EEARSIYVAI LYCGCDWVPG KRYYQHWLTE RTSLRSHCLP VPVEASLSLC
0201: AQAPTLPCAQ PRAPRMAMAA ATGAGAVGEG MRRLTQLSLV SKVCSELESH LGVADRVLAE FVVELGRASA SAAAFAAALR DHGAELPDYL VRSLHAVITA
0301: IPDSAPAPPA SRGAGARGRV DKAAGEDEDQ EPGLHQVRRG RVTRVANAGC FVRLDGGREG LVHVSQMPAR GRGRAGATVT LGQEVFVKVV SVDGAKLGLS
0401: MLDIDQDTER GLHPMRRPHP AEEDAPRANP PADRPRPAGR KKGVSGIFVS DEDDDDKAGP PTRRPTRRMT SPERWEVKQL IAAGVLDAKN YPVLDEDEEG
0501: MLYQEEEVEE LEIELNQDEP PFLWGKGRSS SDMSPVRISM NPEGSMSRAA ALQSALTKER RDIRTQEQRG MVDAIPKDLN RSWEDPISSG RYLMQELMGT
0601: GLSAQSVPEW KMTYGKAGTY GQKSRLSIQE QRQSLPIFRL KKELISAVND NQVLVVIGET GSGKTTQVTQ YLAEAGYTTR GKIACTQPRR VAAESIAKRV
0701: AEEVGCRVGE EVGYSIRFDD CTGPETVIKY MTDGMLLREI LVDGDLSSYS VVMLDEAHER TIYTDILFSL LKQLIKRRND LKLIVTSATL DAEKFSGYFF
0801: DCNIFTIPGR TFPVEILHTK QAESDYMDAA LITVLQIHLT EPEGDILLFL TGQEEIDHAC ERLHERMKAF GGDIPELIIC PVYSALPTEV QSKIFEPAPP
0901: CKRKVVVATN IAEASITIDG IYYVVDPGFA KLNVYNPKLG LDSLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAFRN EMPPTTIPEI QRANLGWTVL
1001: NMKAMGINDL LSFDFMDPPA SQALISAMEQ LYSLGALDEE GLLTRLGRKM AEFPQEPPLS KMLLASVDLG CSDEILTIIA MIQTGNIFYR PREKQAQADR
1101: KRSNFFQPEG DHLTLLTVYE AWKAKGFSGP WCVENFIQVN SLRRAQDVRK QLLEIMDKFK LNVISAGNNS TKIGKALTAG FFFHAARKDP SDGYRTLADH
1201: QQVYIHPSSA LFHQQPQWVI YHEIVMTTKE YMRDVTAVDP RWLLELAPRS YKSVDPTKIS KRKRQERIEP LYDRYNEPNS WRLNLMEAKR TLEENQRKRM
1301: MESGIADEEE KKVKRENTAA YSRR
0101: APPDIKKPSA PAPVPAPSAL PKQSQNKIDA SLDSLLKSLD LEKYLINFQA EEARSIYVAI LYCGCDWVPG KRYYQHWLTE RTSLRSHCLP VPVEASLSLC
0201: AQAPTLPCAQ PRAPRMAMAA ATGAGAVGEG MRRLTQLSLV SKVCSELESH LGVADRVLAE FVVELGRASA SAAAFAAALR DHGAELPDYL VRSLHAVITA
0301: IPDSAPAPPA SRGAGARGRV DKAAGEDEDQ EPGLHQVRRG RVTRVANAGC FVRLDGGREG LVHVSQMPAR GRGRAGATVT LGQEVFVKVV SVDGAKLGLS
0401: MLDIDQDTER GLHPMRRPHP AEEDAPRANP PADRPRPAGR KKGVSGIFVS DEDDDDKAGP PTRRPTRRMT SPERWEVKQL IAAGVLDAKN YPVLDEDEEG
0501: MLYQEEEVEE LEIELNQDEP PFLWGKGRSS SDMSPVRISM NPEGSMSRAA ALQSALTKER RDIRTQEQRG MVDAIPKDLN RSWEDPISSG RYLMQELMGT
0601: GLSAQSVPEW KMTYGKAGTY GQKSRLSIQE QRQSLPIFRL KKELISAVND NQVLVVIGET GSGKTTQVTQ YLAEAGYTTR GKIACTQPRR VAAESIAKRV
0701: AEEVGCRVGE EVGYSIRFDD CTGPETVIKY MTDGMLLREI LVDGDLSSYS VVMLDEAHER TIYTDILFSL LKQLIKRRND LKLIVTSATL DAEKFSGYFF
0801: DCNIFTIPGR TFPVEILHTK QAESDYMDAA LITVLQIHLT EPEGDILLFL TGQEEIDHAC ERLHERMKAF GGDIPELIIC PVYSALPTEV QSKIFEPAPP
0901: CKRKVVVATN IAEASITIDG IYYVVDPGFA KLNVYNPKLG LDSLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAFRN EMPPTTIPEI QRANLGWTVL
1001: NMKAMGINDL LSFDFMDPPA SQALISAMEQ LYSLGALDEE GLLTRLGRKM AEFPQEPPLS KMLLASVDLG CSDEILTIIA MIQTGNIFYR PREKQAQADR
1101: KRSNFFQPEG DHLTLLTVYE AWKAKGFSGP WCVENFIQVN SLRRAQDVRK QLLEIMDKFK LNVISAGNNS TKIGKALTAG FFFHAARKDP SDGYRTLADH
1201: QQVYIHPSSA LFHQQPQWVI YHEIVMTTKE YMRDVTAVDP RWLLELAPRS YKSVDPTKIS KRKRQERIEP LYDRYNEPNS WRLNLMEAKR TLEENQRKRM
1301: MESGIADEEE KKVKRENTAA YSRR
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.