Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51663 | Canola | nucleus | 5.65 | 100.0 |
| CDX91491 | Canola | nucleus | 5.56 | 98.41 |
| CDY13640 | Canola | nucleus | 99.1 | 98.22 |
| Bra025211.1-P | Field mustard | nucleus | 98.83 | 94.11 |
| CDY23338 | Canola | cytosol | 35.61 | 94.08 |
| Os02t0301500-01 | Rice | nucleus | 45.92 | 93.77 |
| PGSC0003DMT400084916 | Potato | nucleus | 65.74 | 91.51 |
| AT3G26560.1 | Thale cress | nucleus | 92.74 | 88.53 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 85.74 | 81.36 |
| GSMUA_Achr10P... | Banana | nucleus | 69.33 | 79.28 |
| Solyc01g110990.2.1 | Tomato | nucleus | 78.74 | 79.03 |
| Solyc07g039550.2.1 | Tomato | nucleus | 83.41 | 78.15 |
| PGSC0003DMT400056692 | Potato | nucleus | 78.21 | 76.42 |
| EER95349 | Sorghum | nucleus | 82.51 | 74.07 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 82.06 | 74.03 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 81.35 | 73.5 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 81.08 | 73.26 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 81.08 | 72.79 |
| EES15324 | Sorghum | nucleus | 69.24 | 72.08 |
| Os06t0343100-01 | Rice | nucleus | 70.04 | 72.05 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 68.25 | 70.72 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 68.43 | 70.52 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 81.17 | 70.21 |
| Zm00001d031581_P002 | Maize | nucleus | 68.7 | 57.85 |
| CDY11413 | Canola | nucleus | 32.02 | 49.72 |
| CDY68405 | Canola | nucleus | 29.87 | 49.7 |
| CDX76626 | Canola | nucleus | 31.93 | 49.58 |
| CDX95715 | Canola | cytosol | 32.11 | 49.38 |
| CDX83337 | Canola | cytosol | 32.02 | 49.38 |
| CDX74061 | Canola | cytosol | 14.17 | 49.22 |
| CDY37024 | Canola | cytosol, mitochondrion | 14.08 | 48.46 |
| CDX74059 | Canola | nucleus | 11.12 | 46.97 |
| CDY60185 | Canola | nucleus | 35.61 | 46.22 |
| CDY40514 | Canola | nucleus | 35.25 | 45.64 |
| CDY34567 | Canola | nucleus | 26.82 | 45.1 |
| CDY36075 | Canola | nucleus | 27.09 | 44.81 |
| CDX99466 | Canola | nucleus | 27.44 | 43.71 |
| CDX78859 | Canola | nucleus | 27.26 | 43.55 |
| CDX85017 | Canola | cytosol, plastid | 27.53 | 42.52 |
| CDY16154 | Canola | nucleus, plastid | 27.35 | 42.19 |
| CDY11762 | Canola | nucleus | 26.19 | 41.48 |
| CDY32702 | Canola | nucleus | 25.74 | 41.47 |
| CDX90112 | Canola | nucleus | 26.19 | 41.42 |
| CDY02818 | Canola | nucleus | 24.57 | 41.27 |
| CDY32278 | Canola | endoplasmic reticulum | 37.58 | 40.13 |
| CDY26898 | Canola | nucleus | 37.49 | 40.04 |
| CDY23802 | Canola | nucleus | 17.85 | 37.9 |
| CDX85676 | Canola | nucleus | 38.21 | 34.13 |
| CDX91151 | Canola | nucleus | 38.03 | 33.95 |
| CDX79642 | Canola | nucleus, vacuole | 22.96 | 24.73 |
| CDX84588 | Canola | plastid, vacuole | 22.78 | 24.54 |
| CDY40601 | Canola | nucleus, plastid | 23.32 | 22.02 |
| CDX70187 | Canola | mitochondrion | 22.78 | 21.97 |
| CDX93688 | Canola | plastid | 23.23 | 21.95 |
| CDX98799 | Canola | mitochondrion | 22.69 | 21.92 |
| CDY48353 | Canola | nucleus | 23.95 | 21.83 |
| CDY57512 | Canola | nucleus | 21.97 | 21.59 |
| CDY17694 | Canola | nucleus | 21.97 | 21.59 |
| CDY34159 | Canola | nucleus | 23.86 | 21.5 |
| CDY10756 | Canola | nucleus | 18.92 | 19.38 |
| CDY39917 | Canola | nucleus | 22.51 | 17.76 |
| CDY29164 | Canola | nucleus | 22.51 | 17.63 |
| CDY63687 | Canola | nucleus, plastid | 17.04 | 17.12 |
| CDX97797 | Canola | nucleus | 19.28 | 16.65 |
| CDY29644 | Canola | nucleus | 19.37 | 16.53 |
| CDY10215 | Canola | nucleus | 18.48 | 16.04 |
| CDX69841 | Canola | plastid | 23.59 | 14.88 |
| CDX81170 | Canola | plastid | 23.41 | 14.8 |
| CDX78376 | Canola | plastid | 23.23 | 14.74 |
| CDX96996 | Canola | nucleus | 23.05 | 14.53 |
Protein Annotations
| Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078D5M5 | EnsemblPlants:CDX83624 | ProteinID:CDX83624 |
| ProteinID:CDX83624.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00139297001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR003029 | InterPro:IPR014001 | InterPro:NA-bd_OB-fold | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00575 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS50126 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF120 | InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF50249 | SUPFAM:SSF52540 | UniParc:UPI0004EE32C1 |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g23640D
Coordinates
chrLK031833:-:1152168..1156339
Molecular Weight (calculated)
127239.0 Da
IEP (calculated)
7.597
GRAVY (calculated)
-0.624
Length
1115 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEKKELNKLN HLSLVSNICN ELETHLGQAP KDLAEYIIHL GRNSETSDEL DKKLKKDGAE LPDYFVRSLL TVIHGIYPPQ PKFKGLAIRD TKDKERQREE
0101: DRNRRGSGRD RDRDDRRDRH RDRNRGDEDG DDRRSGRHRG RDRDRGVQDE YTGANEPELY QVYKGRVTRV MDSGCFVQFD RFRGKEGLVH VSQMATRRVD
0201: RAESVVKRDM EVYVKVVSIK EGGKYSLSMK DVDQNTGRDL IPLKKPSDDD DLGRSNPSYR TKDGQVTKTG ISGIRIVEES NVAPSRRPLK KMSSPERWEA
0301: KQLIAAGALK ASEFPDYDED GDGMLYQEEG AEEELEIEMN EEEPAFLQGQ TRYSVDMSPV KIFKNPEGSL SRAAALQSAL TKERREMREQ QQRTMLDSIP
0401: KDLNRPWEDP MPETGERHLA QELRGVGLSA YDMPEWKKDA FGKTPTFGQR SKLSIQEQRE SLPIYKLKKE LIQAVHDNQV LVVIGETGSG KTTQVTQYLA
0501: EAGYTTKGKI GCTQPRRVAA MSVAKRVAEE FGCRLGEEVG YAIRFEDCTG PDTVIKYMTD GMLLREILID ENLSQYSVIM LDEAHERTIH TDVLFGLLKK
0601: LLKRRLDLRL IVTSATLDAE KFSGYFFNCN IFTIPGRTFP VEILYTKQPE SDYLDAALIT VLQIHLTEPE GDILLFLTGQ EEIDSACQSL YERMKNLGKN
0701: VPELIILPVY SALPSEMQSR IFDPPPPGTR KVVVATNIAE ASLTIDGIYY VVDPGFAKQN VYNPKQGLES LVITPISQAS AKQRAGRAGR TGPGKCYRLY
0801: TESAYRNEMP PTSIPEIQRI NLGMTTLTMK AMGINDLLSF DFMDPPQPQA LISAMEQLYS LGALDEEGLL TKLGRKMAEF PLEPPLSKML LASVDLGCSD
0901: EILTMIAMIQ TGNIFYRPRE KQAQADQKRA KFFQPEGDHL TLLAVYEAWK AKNFSGPWCF ENFIQSRSLR RAQDVMKQLL SIMDKYKLEV VSAGKNFTKI
1001: RKAITAGFFF HGARKDPQEG YRTLVENQPV YIHPSSALFQ RQPDWVIYHD LVMTTKEYMR EVTVIDPKWL VELAPRFFKV ADPTHMSKRK RQERIEPLYD
1101: RYHEPNSWRL SKRRA
0101: DRNRRGSGRD RDRDDRRDRH RDRNRGDEDG DDRRSGRHRG RDRDRGVQDE YTGANEPELY QVYKGRVTRV MDSGCFVQFD RFRGKEGLVH VSQMATRRVD
0201: RAESVVKRDM EVYVKVVSIK EGGKYSLSMK DVDQNTGRDL IPLKKPSDDD DLGRSNPSYR TKDGQVTKTG ISGIRIVEES NVAPSRRPLK KMSSPERWEA
0301: KQLIAAGALK ASEFPDYDED GDGMLYQEEG AEEELEIEMN EEEPAFLQGQ TRYSVDMSPV KIFKNPEGSL SRAAALQSAL TKERREMREQ QQRTMLDSIP
0401: KDLNRPWEDP MPETGERHLA QELRGVGLSA YDMPEWKKDA FGKTPTFGQR SKLSIQEQRE SLPIYKLKKE LIQAVHDNQV LVVIGETGSG KTTQVTQYLA
0501: EAGYTTKGKI GCTQPRRVAA MSVAKRVAEE FGCRLGEEVG YAIRFEDCTG PDTVIKYMTD GMLLREILID ENLSQYSVIM LDEAHERTIH TDVLFGLLKK
0601: LLKRRLDLRL IVTSATLDAE KFSGYFFNCN IFTIPGRTFP VEILYTKQPE SDYLDAALIT VLQIHLTEPE GDILLFLTGQ EEIDSACQSL YERMKNLGKN
0701: VPELIILPVY SALPSEMQSR IFDPPPPGTR KVVVATNIAE ASLTIDGIYY VVDPGFAKQN VYNPKQGLES LVITPISQAS AKQRAGRAGR TGPGKCYRLY
0801: TESAYRNEMP PTSIPEIQRI NLGMTTLTMK AMGINDLLSF DFMDPPQPQA LISAMEQLYS LGALDEEGLL TKLGRKMAEF PLEPPLSKML LASVDLGCSD
0901: EILTMIAMIQ TGNIFYRPRE KQAQADQKRA KFFQPEGDHL TLLAVYEAWK AKNFSGPWCF ENFIQSRSLR RAQDVMKQLL SIMDKYKLEV VSAGKNFTKI
1001: RKAITAGFFF HGARKDPQEG YRTLVENQPV YIHPSSALFQ RQPDWVIYHD LVMTTKEYMR EVTVIDPKWL VELAPRFFKV ADPTHMSKRK RQERIEPLYD
1101: RYHEPNSWRL SKRRA
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.