Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023387.1-P | Field mustard | nucleus | 99.52 | 99.52 |
| CDX91151 | Canola | nucleus | 98.88 | 98.8 |
| AT5G13010.1 | Thale cress | nucleus | 90.3 | 89.8 |
| VIT_01s0010g02920.t01 | Wine grape | nucleus | 62.26 | 88.8 |
| CDY23802 | Canola | nucleus | 34.05 | 80.95 |
| Solyc12g089010.1.1 | Tomato | nucleus | 52.08 | 80.25 |
| TraesCS3D01G264900.1 | Wheat | plastid | 56.41 | 76.44 |
| Solyc10g076910.1.1 | Tomato | nucleus | 77.88 | 75.64 |
| PGSC0003DMT400018531 | Potato | nucleus | 77.88 | 75.64 |
| KRH23170 | Soybean | nucleus | 76.68 | 75.3 |
| KRH10165 | Soybean | nucleus | 76.36 | 74.92 |
| PGSC0003DMT400039875 | Potato | nucleus | 54.73 | 74.0 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 72.92 | 72.05 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 72.76 | 71.89 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 72.6 | 71.73 |
| KXG36287 | Sorghum | nucleus | 72.76 | 70.66 |
| Os07t0508000-01 | Rice | nucleus | 72.44 | 70.62 |
| Zm00001d006459_P003 | Maize | plastid | 71.71 | 66.49 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 72.76 | 64.72 |
| CDY23338 | Canola | cytosol | 15.95 | 47.16 |
| CDY37024 | Canola | cytosol, mitochondrion | 11.62 | 44.75 |
| CDY68405 | Canola | nucleus | 23.08 | 42.99 |
| CDX74061 | Canola | cytosol | 10.9 | 42.37 |
| CDX76626 | Canola | nucleus | 23.88 | 41.5 |
| CDY11413 | Canola | nucleus | 23.88 | 41.5 |
| CDX95715 | Canola | cytosol | 24.04 | 41.38 |
| CDX83337 | Canola | cytosol | 23.96 | 41.36 |
| CDX74059 | Canola | nucleus | 8.65 | 40.91 |
| CDX99466 | Canola | nucleus | 22.76 | 40.57 |
| CDX78859 | Canola | nucleus | 22.52 | 40.26 |
| CDY11762 | Canola | nucleus | 22.68 | 40.2 |
| CDX90112 | Canola | nucleus | 22.68 | 40.14 |
| CDY40514 | Canola | nucleus | 27.48 | 39.84 |
| CDY60185 | Canola | nucleus | 27.4 | 39.81 |
| CDY34567 | Canola | nucleus | 20.43 | 38.46 |
| CDY36075 | Canola | nucleus | 20.67 | 38.28 |
| CDX85017 | Canola | cytosol, plastid | 22.12 | 38.23 |
| CDX83624 | Canola | nucleus | 34.13 | 38.21 |
| CDY16154 | Canola | nucleus, plastid | 22.12 | 38.17 |
| CDY13640 | Canola | nucleus | 34.38 | 38.13 |
| CDY32702 | Canola | nucleus | 20.43 | 36.85 |
| CDY32278 | Canola | endoplasmic reticulum | 30.53 | 36.49 |
| CDY26898 | Canola | nucleus | 30.53 | 36.49 |
| CDY02818 | Canola | nucleus | 19.23 | 36.14 |
| CDY51663 | Canola | nucleus | 1.68 | 33.33 |
| CDX91491 | Canola | nucleus | 1.6 | 31.75 |
| CDX79642 | Canola | nucleus, vacuole | 19.31 | 23.29 |
| CDX84588 | Canola | plastid, vacuole | 19.31 | 23.29 |
| CDX93688 | Canola | plastid | 21.23 | 22.46 |
| CDY40601 | Canola | nucleus, plastid | 21.15 | 22.35 |
| CDY17694 | Canola | nucleus | 20.19 | 22.2 |
| CDX98799 | Canola | mitochondrion | 20.51 | 22.18 |
| CDX70187 | Canola | mitochondrion | 20.51 | 22.15 |
| CDY57512 | Canola | nucleus | 20.03 | 22.03 |
| CDY48353 | Canola | nucleus | 20.99 | 21.42 |
| CDY34159 | Canola | nucleus | 21.07 | 21.26 |
| CDY10756 | Canola | nucleus | 17.31 | 19.83 |
| CDX97797 | Canola | nucleus | 17.39 | 16.81 |
| CDY29644 | Canola | nucleus | 17.55 | 16.76 |
| CDY29164 | Canola | nucleus | 18.83 | 16.5 |
| CDY39917 | Canola | nucleus | 18.59 | 16.42 |
| CDY63687 | Canola | nucleus, plastid | 14.18 | 15.95 |
| CDY10215 | Canola | nucleus | 16.35 | 15.89 |
| CDX78376 | Canola | plastid | 19.71 | 14.0 |
| CDX81170 | Canola | plastid | 19.39 | 13.73 |
| CDX69841 | Canola | plastid | 19.31 | 13.64 |
| CDX96996 | Canola | nucleus | 19.31 | 13.62 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.1.6 | Gene3D:3.40.50.300 | GO:A0A078D8U6 | EnsemblPlants:CDX85676 | ProteinID:CDX85676 |
| ProteinID:CDX85676.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00143414001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF91 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0004EE30D2 | SEG:seg | : | : | : |
Description
BnaA02g01370D
Coordinates
chrLK031842:-:1146141..1152322
Molecular Weight (calculated)
141214.0 Da
IEP (calculated)
6.428
GRAVY (calculated)
-0.708
Length
1248 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQVDPFKATE TSETEKETGG DIPVKEKLTF TAPERKSRLG LDVRAMEKRE SAKSQGEFKV PRKPAVSVSA SMDEDDRSGV SGIDDGGDNS RPDHSSRRYR
0101: DKSSRSETPQ ESTVTTEKAA ASDTPRASRY ERDDSSRNRN EYRYDRSETP RSRQRSTYDE MDRYRGRESY RESPRDYHGE KRGRYSVDRR TPGRSDWDDG
0201: RWEWEDSPRG DRDSTYNKRH QPSPSPMLGA ASPDARLASP WLDTPRSTMA SASPWDIGAP SPVPIRASGS SVRSSGSRYG GRSNQRADSR EGDLTKEGHP
0301: DEDRSEGAEE FNHEITDTMR REMEYHSDLA WYDTDEGNSL FDADSASFFL GDDASVQKKE AELAKRLVRR DGSKMSLAQS KKYSQLNADN AQWEDRQLLR
0401: SGAVRGTEVQ TEFDSEEERK AILLVHDTKP PFLDGRIVFT KQAEPVMPIK DPTSDMAIIS RKGSGLVREI REKQSMHKSR QRFWELAGSN LGNILGVEKT
0501: AEQIDADTAE VGDEGEVDFK NEAKFAQHMK KGEAVSEFAM SKTMAQQRQY LPIFSVRDEL LQVIRENQVI VVVGETGSGK TTQLTQYLHE DGYTVNGIVG
0601: CTQPRRVAAM SVAKRVSEEM ETELGDKVGY AIRFEDVTGP NTVIKYMTDG VLLRETLKDS DLDKYRVVVM DEAHERSLNT DVLFGILKKV VARRRDFKLI
0701: VTSATLNAQK FSDFFGSVPI FNIPGRTFPV NILYSKSPCE DYVEAAVKQA MTIHITSPPG DILIFMTGQD EIEAACFSLK ERMEQLIASS KRDVTNLLIL
0801: PIYSQLPADL QAKIFQKPED GARKCIVATN IAETSLTVDG IYYVIDTGYG KMKVFNPRMG MDALQVFPIS RAASDQRAGR AGRTGPGTCY RLYTESAYLN
0901: EMLPSPVPEI QRTNLGNVVL LLKSLKIDNL LEFDFMDPPP QENILNSMYQ LWVLGALSNV GGLTDLGWKM VEFPLDPPLA KMLLMGERLD CIDEVLTIVS
1001: MLSVPSVFFR PKERAEESDA AREKFFVPES DHLTLLNVYK QWKEHDYRGD WCNDHYLQVK GLRKAREVRS QLLDILKQLK IPLKSCGPDW DIVRKAICSA
1101: YFHNSARLKG VGEYVNCRTG MPCHLHPSSA LYGLGYTPDY VVYHELILTT KEYMQCATSV EPHWLAELGP MFFSVKDSDT SMLEHKKKQK EEKTAMEEEM
1201: EKLRRDQAEA EVRSKEREKR KRAKQQQQVS GPGMKKGTTY LRPKKFGL
0101: DKSSRSETPQ ESTVTTEKAA ASDTPRASRY ERDDSSRNRN EYRYDRSETP RSRQRSTYDE MDRYRGRESY RESPRDYHGE KRGRYSVDRR TPGRSDWDDG
0201: RWEWEDSPRG DRDSTYNKRH QPSPSPMLGA ASPDARLASP WLDTPRSTMA SASPWDIGAP SPVPIRASGS SVRSSGSRYG GRSNQRADSR EGDLTKEGHP
0301: DEDRSEGAEE FNHEITDTMR REMEYHSDLA WYDTDEGNSL FDADSASFFL GDDASVQKKE AELAKRLVRR DGSKMSLAQS KKYSQLNADN AQWEDRQLLR
0401: SGAVRGTEVQ TEFDSEEERK AILLVHDTKP PFLDGRIVFT KQAEPVMPIK DPTSDMAIIS RKGSGLVREI REKQSMHKSR QRFWELAGSN LGNILGVEKT
0501: AEQIDADTAE VGDEGEVDFK NEAKFAQHMK KGEAVSEFAM SKTMAQQRQY LPIFSVRDEL LQVIRENQVI VVVGETGSGK TTQLTQYLHE DGYTVNGIVG
0601: CTQPRRVAAM SVAKRVSEEM ETELGDKVGY AIRFEDVTGP NTVIKYMTDG VLLRETLKDS DLDKYRVVVM DEAHERSLNT DVLFGILKKV VARRRDFKLI
0701: VTSATLNAQK FSDFFGSVPI FNIPGRTFPV NILYSKSPCE DYVEAAVKQA MTIHITSPPG DILIFMTGQD EIEAACFSLK ERMEQLIASS KRDVTNLLIL
0801: PIYSQLPADL QAKIFQKPED GARKCIVATN IAETSLTVDG IYYVIDTGYG KMKVFNPRMG MDALQVFPIS RAASDQRAGR AGRTGPGTCY RLYTESAYLN
0901: EMLPSPVPEI QRTNLGNVVL LLKSLKIDNL LEFDFMDPPP QENILNSMYQ LWVLGALSNV GGLTDLGWKM VEFPLDPPLA KMLLMGERLD CIDEVLTIVS
1001: MLSVPSVFFR PKERAEESDA AREKFFVPES DHLTLLNVYK QWKEHDYRGD WCNDHYLQVK GLRKAREVRS QLLDILKQLK IPLKSCGPDW DIVRKAICSA
1101: YFHNSARLKG VGEYVNCRTG MPCHLHPSSA LYGLGYTPDY VVYHELILTT KEYMQCATSV EPHWLAELGP MFFSVKDSDT SMLEHKKKQK EEKTAMEEEM
1201: EKLRRDQAEA EVRSKEREKR KRAKQQQQVS GPGMKKGTTY LRPKKFGL
0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
Arabidopsis Description
CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.