Factsheet for HORVU2Hr1G047870.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G249700.1	Wheat	nucleus	98.34	98.34
TraesCS2A01G233700.1	Wheat	nucleus	98.02	98.02
Os07t0508000-01	Rice	nucleus	90.02	88.83
VIT_01s0010g02920.t01	Wine grape	nucleus	61.2	88.34
TraesCS2D01G231900.1	Wheat	nucleus	97.86	88.1
KXG36287	Sorghum	nucleus	89.23	87.7
Zm00001d006459_P003	Maize	plastid	86.54	81.2
Solyc12g089010.1.1	Tomato	nucleus	51.39	80.12
KRH23170	Soybean	nucleus	74.74	74.27
PGSC0003DMT400039875	Potato	nucleus	54.16	74.11
CDY23802	Canola	nucleus	30.8	74.1
KRH10165	Soybean	nucleus	74.11	73.58
Bra023387.1-P	Field mustard	nucleus	71.97	72.84
CDX85676	Canola	nucleus	71.89	72.76
CDX91151	Canola	nucleus	71.89	72.7
Solyc10g076910.1.1	Tomato	nucleus	73.56	72.3
PGSC0003DMT400018531	Potato	nucleus	73.56	72.3
AT5G13010.1	Thale cress	nucleus	71.58	72.03
HORVU4Hr1G052730.3	Barley	cytosol	23.2	40.64
HORVU3Hr1G028550.17	Barley	cytosol	21.14	38.31
HORVU7Hr1G032080.3	Barley	plastid	23.59	36.39
HORVU1Hr1G056370.1	Barley	nucleus	29.61	35.18
HORVU1Hr1G056400.1	Barley	nucleus	29.61	35.12
HORVU4Hr1G088270.17	Barley	mitochondrion	30.01	35.09
HORVU0Hr1G007860.1	Barley	nucleus	33.41	33.98
HORVU1Hr1G039880.1	Barley	nucleus	18.76	25.08
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	19.24	21.13
HORVU0Hr1G039590.6	Barley	nucleus	20.51	20.12
HORVU3Hr1G002800.8	Barley	mitochondrion	19.0	19.25
HORVU3Hr1G074660.7	Barley	plastid	17.97	17.82
HORVU5Hr1G019730.1	Barley	nucleus, plastid	19.56	14.46
HORVU2Hr1G030040.17	Barley	nucleus	19.79	13.7

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.6	Gene3D:3.40.50.300	UniProt:A0A287HXW9	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF1605	GO:GO:0000003	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009817	GO:GO:0009987
GO:GO:0010051	GO:GO:0010467	GO:GO:0016049	GO:GO:0016246	GO:GO:0016787	GO:GO:0019538
GO:GO:0030154	GO:GO:0031053	GO:GO:0033120	GO:GO:0040007	GO:GO:0040029	GO:GO:0048364
GO:GO:0048767	EnsemblPlantsGene:HORVU2Hr1G047870	EnsemblPlants:HORVU2Hr1G047870.2	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF91	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI000B482E36	SEG:seg	:

Description

No Description!

Coordinates

chrchr2H:+:265041649..265049630

Molecular Weight (calculated)

142326.0 Da

IEP (calculated)

6.773

GRAVY (calculated)

-0.672

Length

1263 amino acids

Sequence
(BLAST)

0001: MSSDGRLDLD ATTSTLGPED DTAQGLILPI KDKVMYRPPP GKSALGLDLL ARKKREKDGT NSFKRPPEKV VTAASSMDED ERPGSTDNDA SSLSGGDRGS
0101: VARRYRGTNS SEKTSSKEST VTDENERGLT PRHRDESHRQ QTHASRYEPN DDRGSRDKHG ERETSASIGY SSSGKRGYRD DRESNSRRNE RSRSTSIDYT
0201: NKRSRDDYSS RSSRTPARSD WDSGRWEWED TPRREYRDDR PGSQRYHPTR SPMLAAASPD ARLVSPWLGG HTPRYAVSPW DHVSPSPAPV RASGSSKGSS
0301: YSSSSGRSHQ LTFSNDAEAD RSLSAADRNY EITEEMMQEM DYNADRAWYD CEEHNTVFDG DNYAADDSSY KKKEAQLPKK LTRKDGSLMT LSQSKKLSQM
0401: TADNAQWEDR QLLRSGAVRG TEVQTEFDDE DERKVILLVH DTKPPFLDGR VVYTKQAEPV MPLKDPTSDM AIIARKGSVL VREIREKQSQ NKSRQRFWEL
0501: AGSNLGNILG VEKTTEQVDA DTAVVGDQGE IDFKEEAKFS QHLKEKAEAV SDFAKSKSLS QQRQYLPIYT VRDDLLQVVR ENQVVVVVGE TGSGKTTQLT
0601: QYLHEDGYTT TGVVGCTQPR RVAAMSVAKR VSEEMETELG DKVGYAIRFE DVTCANTIIK YMTDGVLLRE TLKDADLDKY RVIVMDEAHE RSLNTDVLFG
0701: ILKKVVARRR DFKLIVTSAT LNADKFSKFF GGVPVFNIPG RTFPVNILFS KTPCEDYVEA AVKQAMTIHI TSGPGDILIF MTGQEEIEAT CYALAERMEQ
0801: LISSSTKNVP QLSILPIYSQ LPADLQAKIF QKAEEGTRKC IVATNIAETS LTVDGIFYVI DTGYGKMKVY NPRMGMDALQ VFPCSRAAAD QRAGRAGRTG
0901: PGTCYRLFTE SAYQNEMLPN PVPEIQRTNL GNVVLLLKSL KVENLLDFDF MDPPPQENIL NSMYQLWVLG ALNNVGGLTE IGWKMVEFPL DPTLAKMLLM
1001: GEKLDCLDEV LTIVSMLSVP SVFFRPKDRA EESDAAREKF FVPESDHLTL LNVYLQWKSN QYRGDWCNDH FLHVKGLRKA REVRSQLLDI LKALKIPLTS
1101: CHMEWDVVRK AICSAYFHNS ARLKGIGEYV NCRNGMPCHL HPSSALYGLG YTPDYVVYHE LVLTTKEYMQ CVSAVDPQWL AELGPMFFSV KDTDTSLLDH
1201: KKRQKEEKTA MEEEMEKLRQ EQAEAALMEK ERERRKRAKQ QQQISMPGLK KGSTYLRPKK MGL

Best Arabidopsis Sequence Match ( AT5G13010.1 )
(BLAST)

0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL

Arabidopsis Description

CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.