Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g076910.1.1 | Tomato | nucleus | 98.37 | 98.37 |
| VIT_01s0010g02920.t01 | Wine grape | nucleus | 61.79 | 90.74 |
| PGSC0003DMT400039875 | Potato | nucleus | 57.04 | 79.41 |
| KRH23170 | Soybean | nucleus | 77.67 | 78.52 |
| TraesCS3D01G264900.1 | Wheat | plastid | 56.11 | 78.28 |
| CDX85676 | Canola | nucleus | 75.64 | 77.88 |
| Bra023387.1-P | Field mustard | nucleus | 75.56 | 77.8 |
| KRH10165 | Soybean | nucleus | 76.89 | 77.67 |
| CDX91151 | Canola | nucleus | 75.33 | 77.5 |
| AT5G13010.1 | Thale cress | nucleus | 75.49 | 77.29 |
| CDY23802 | Canola | nucleus | 30.89 | 75.62 |
| Os07t0508000-01 | Rice | nucleus | 73.31 | 73.59 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 72.3 | 73.56 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 72.3 | 73.56 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 72.22 | 73.48 |
| KXG36287 | Sorghum | nucleus | 73.46 | 73.46 |
| Zm00001d006459_P003 | Maize | plastid | 71.75 | 68.5 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 72.53 | 66.43 |
| PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 14.09 | 51.86 |
| PGSC0003DMT400084916 | Potato | nucleus | 30.27 | 48.56 |
| PGSC0003DMT400005723 | Potato | nucleus | 27.47 | 42.94 |
| PGSC0003DMT400023284 | Potato | nucleus | 23.19 | 41.22 |
| PGSC0003DMT400046188 | Potato | nucleus | 22.1 | 41.16 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 11.13 | 37.93 |
| PGSC0003DMT400063370 | Potato | nucleus | 30.27 | 37.05 |
| PGSC0003DMT400056692 | Potato | nucleus | 32.14 | 36.2 |
| PGSC0003DMT400055058 | Potato | nucleus | 18.52 | 27.87 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 20.16 | 22.25 |
| PGSC0003DMT400000297 | Potato | nucleus | 20.7 | 19.91 |
| PGSC0003DMT400041805 | Potato | nucleus | 19.07 | 15.1 |
| PGSC0003DMT400060759 | Potato | nucleus | 19.14 | 14.23 |
| PGSC0003DMT400063366 | Potato | plastid | 1.25 | 11.19 |
| PGSC0003DMT400041647 | Potato | cytosol | 0.62 | 2.18 |
Protein Annotations
| Gene3D:1.20.120.1080 | EntrezGene:102596865 | MapMan:16.4.7.1.6 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M1AAT4 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF04408 | PFAM:PF07717 | EnsemblPlantsGene:PGSC0003DMG400007192 | PGSC:PGSC0003DMG400007192 | EnsemblPlants:PGSC0003DMT400018531 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF91 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0002949621 | RefSeq:XP_006364743.1 | RefSeq:XP_015159567.1 | RefSeq:XP_015159568.1 | RefSeq:XP_015159569.1 |
| SEG:seg | : | : | : | : | : |
Description
ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400007192]
Coordinates
chr10:+:59652522..59664749
Molecular Weight (calculated)
144020.0 Da
IEP (calculated)
6.168
GRAVY (calculated)
-0.618
Length
1285 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQKGDAGPID LDKTTTTLEP DKTSSGGLFV PGKERVVFKP SERKSLLGLD ALAIAKRGGA TVESEFKVPR ERLASFASSL DEDEESSAAS GIDELGHTAS
0101: NVSRNNVQRR YRESYASETS VSGSAVTYER EDAETVVRPH LNENTEVPAA SSGSLRSTIS RGESVDHERD GSKYRDNYRS ESREGRRRDR RTSREEHHYR
0201: DSSRGYEREY DGDDGRKRSR YDGFRRTPGR SEWDDGRWEW QDTPRRDSRS SSSSRHYEPS PSPKFLGASP DSRLVSPWLG DHTPHSTGAA SPWDSVAPSP
0301: TPIRASGSSV RSSSSRYGAK SSLIMSSTGG ALSEDGGDDT NGASEDQNEE ITESMRLEME YNSDRAWYDR EEGSTVFEGD GSSAFLGDEA SFQKKEVELA
0401: KKLVRRDGSK MSLAQSKRLS QLTADNAQWE DRQLLRSGAV RGTEVQTEFD DEDERKVILL VHDTKPPFLD GRIVFTKQAE PIMPIKDPTS DMAIISRKGS
0501: ALVREIREKQ NMHKSRQRFW ELAGSKLGDI LGVEKSAEQV DADTATVGED GEVDFKGEAR FSQHLKKGEA VSDFALSKTL SQQRQYLPIF SVRDDLLQVV
0601: RENQVVVVVG ETGSGKTTQL TQYLHEDGYT SNGIVGCTQP RRVAAMSVAK RVSEEMETEL GDKVGYAIRF EDVTGPSTVI KYMTDGVLLR ETLKDPDLEK
0701: YRVIVMDEAH ERSLNTDVLF GILKKVVARR RDFKLIVTSA TLNAQKFSNF FGSVPIFHIP GRTFPVNKLY SKTPCEDYVE AAVKQAMTIH ITSAPGDILI
0801: FMTGQDEIEA TCYALSERME QLTSSAKQAV PNLLILPIYS QLPADLQAKI FQKAEDGARK CIVATNIAET SLTVDGIYYV IDTGYGKMKV YNPRMGMDAL
0901: QVFPISRAAA DQRAGRAGRT GPGTCYRLYT ENAYENEMLQ SPVPEIQRTN LGNVVLLLKS LKIQNLLDFD FMDPPPQDNI LNSMYQLWVL GALNNVGDLT
1001: SLGWKMVEFP LDPPLAKMLL MGEQLECLNE VLTIVSMLSV PSVFFRPKDR AEESDAAREK FFVPESDHLT LLNVYQQWKA NQYRGDWCND HFLQVKGLRK
1101: AREVRSQLLD ILKTLKIPLT SCGPDWDVVR KAICSAYFHN AARLKGVGEY VNCRNGMPCH LHPTSALYGL GYTPDNVVYH ELILTSKEYM QCVTAVEPHW
1201: LAELGPMFFS VKDSDTSMLE HKKKQKEEKT AMEEEMEKLR TVQAEAERRN KEKEKEKRAK ELQQVSMPGL KKGSTTYLRP KRLGL
0101: NVSRNNVQRR YRESYASETS VSGSAVTYER EDAETVVRPH LNENTEVPAA SSGSLRSTIS RGESVDHERD GSKYRDNYRS ESREGRRRDR RTSREEHHYR
0201: DSSRGYEREY DGDDGRKRSR YDGFRRTPGR SEWDDGRWEW QDTPRRDSRS SSSSRHYEPS PSPKFLGASP DSRLVSPWLG DHTPHSTGAA SPWDSVAPSP
0301: TPIRASGSSV RSSSSRYGAK SSLIMSSTGG ALSEDGGDDT NGASEDQNEE ITESMRLEME YNSDRAWYDR EEGSTVFEGD GSSAFLGDEA SFQKKEVELA
0401: KKLVRRDGSK MSLAQSKRLS QLTADNAQWE DRQLLRSGAV RGTEVQTEFD DEDERKVILL VHDTKPPFLD GRIVFTKQAE PIMPIKDPTS DMAIISRKGS
0501: ALVREIREKQ NMHKSRQRFW ELAGSKLGDI LGVEKSAEQV DADTATVGED GEVDFKGEAR FSQHLKKGEA VSDFALSKTL SQQRQYLPIF SVRDDLLQVV
0601: RENQVVVVVG ETGSGKTTQL TQYLHEDGYT SNGIVGCTQP RRVAAMSVAK RVSEEMETEL GDKVGYAIRF EDVTGPSTVI KYMTDGVLLR ETLKDPDLEK
0701: YRVIVMDEAH ERSLNTDVLF GILKKVVARR RDFKLIVTSA TLNAQKFSNF FGSVPIFHIP GRTFPVNKLY SKTPCEDYVE AAVKQAMTIH ITSAPGDILI
0801: FMTGQDEIEA TCYALSERME QLTSSAKQAV PNLLILPIYS QLPADLQAKI FQKAEDGARK CIVATNIAET SLTVDGIYYV IDTGYGKMKV YNPRMGMDAL
0901: QVFPISRAAA DQRAGRAGRT GPGTCYRLYT ENAYENEMLQ SPVPEIQRTN LGNVVLLLKS LKIQNLLDFD FMDPPPQDNI LNSMYQLWVL GALNNVGDLT
1001: SLGWKMVEFP LDPPLAKMLL MGEQLECLNE VLTIVSMLSV PSVFFRPKDR AEESDAAREK FFVPESDHLT LLNVYQQWKA NQYRGDWCND HFLQVKGLRK
1101: AREVRSQLLD ILKTLKIPLT SCGPDWDVVR KAICSAYFHN AARLKGVGEY VNCRNGMPCH LHPTSALYGL GYTPDNVVYH ELILTSKEYM QCVTAVEPHW
1201: LAELGPMFFS VKDSDTSMLE HKKKQKEEKT AMEEEMEKLR TVQAEAERRN KEKEKEKRAK ELQQVSMPGL KKGSTTYLRP KRLGL
0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
Arabidopsis Description
CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.