Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g089010.1.1 | Tomato | nucleus | 84.07 | 95.8 |
| VIT_01s0010g02920.t01 | Wine grape | nucleus | 72.81 | 76.8 |
| CDY23802 | Canola | nucleus | 38.68 | 68.0 |
| TraesCS3D01G264900.1 | Wheat | plastid | 66.85 | 66.99 |
| PGSC0003DMT400018531 | Potato | nucleus | 79.41 | 57.04 |
| CDX85676 | Canola | nucleus | 74.0 | 54.73 |
| CDX91151 | Canola | nucleus | 74.0 | 54.68 |
| KRH23170 | Soybean | nucleus | 75.3 | 54.68 |
| Bra023387.1-P | Field mustard | nucleus | 73.89 | 54.65 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 74.43 | 54.39 |
| KRH10165 | Soybean | nucleus | 74.86 | 54.32 |
| AT5G13010.1 | Thale cress | nucleus | 73.78 | 54.26 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 74.21 | 54.24 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 74.11 | 54.16 |
| Os07t0508000-01 | Rice | nucleus | 74.43 | 53.67 |
| KXG36287 | Sorghum | nucleus | 74.54 | 53.54 |
| PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 19.93 | 52.72 |
| Zm00001d006459_P003 | Maize | plastid | 74.21 | 50.89 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 74.11 | 48.75 |
| PGSC0003DMT400084916 | Potato | nucleus | 40.52 | 46.69 |
| PGSC0003DMT400005723 | Potato | nucleus | 36.51 | 41.0 |
| PGSC0003DMT400023284 | Potato | nucleus | 31.09 | 39.7 |
| PGSC0003DMT400046188 | Potato | nucleus | 29.36 | 39.28 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 15.71 | 38.46 |
| PGSC0003DMT400063370 | Potato | nucleus | 37.81 | 33.24 |
| PGSC0003DMT400056692 | Potato | nucleus | 40.2 | 32.52 |
| PGSC0003DMT400055058 | Potato | nucleus | 25.57 | 27.63 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 25.03 | 19.85 |
| PGSC0003DMT400000297 | Potato | nucleus | 28.06 | 19.39 |
| PGSC0003DMT400041805 | Potato | nucleus | 26.0 | 14.8 |
| PGSC0003DMT400060759 | Potato | nucleus | 26.65 | 14.23 |
| PGSC0003DMT400063366 | Potato | plastid | 0.33 | 2.1 |
| PGSC0003DMT400041647 | Potato | cytosol | 0.65 | 1.63 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.1.6 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| InterPro:DUF2075 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | UniProt:M1B8W9 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| PFAM:PF09848 | EnsemblPlantsGene:PGSC0003DMG400015422 | PGSC:PGSC0003DMG400015422 | EnsemblPlants:PGSC0003DMT400039875 | ScanProsite:PS00690 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF91 | SMART:SM00382 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI000295BE3E | SEG:seg | : | : |
Description
ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400015422]
Coordinates
chr12:+:56785189..56790654
Molecular Weight (calculated)
104069.0 Da
IEP (calculated)
7.220
GRAVY (calculated)
-0.284
Length
923 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERDRRSKS MEVRRRKRTS SEEHSYAVAA SSPWDIVAPS PIPIRASVRS STSKYPAKNY NFSAKRNCIS EIGSTNDYSR TRKKILGKNW ENRQLLRSGA
101: VRGNKVQTEF DDDEEERKVI LHVHDIKLPP FLDGRVIFTE QTEPILPIKD AMSDMALISR KGSALVREIH EKQKRDKSRQ RFWELAGSKL GDILGVEKSV
201: DEIDADTVVV GEDGAVDFKG KARFSQHLAV SDFTKSKTIS QQRQNLPIFS VRDELLQVVS ENQVVVIIGE TGSGKTTQLT QYLYEYGYTV NGIIGCTQPR
301: RVAAMSVAKR VSEEMETELG DKVGYAIRFE DATGPSTVIK YMTDGVLLRE TLKDPDLEKY SIILMDEAHE RSLDTDVLFG ILKKVVARRR DFKLIVTSAT
401: LNGEKFSNFF GGVPIFHIPG RTFRVQICYS KTPCEDYVEA AVKQAMTIHI AGAPGDILIF LTGQDEIEAT CYALSERMEQ LISSTKQPVP KLLILPIYSQ
501: LPADLQAKIF QNAEDGARKC IVATNIAETS LTIDGIFYVI DTGYVKMKVY NPRMGMDALQ VFPISRASAD QRAGRAGRTG PGTCYRLYTE NAYENEMLQS
601: PVPEIQQTNL GNVVLLLKSL KIQNLLDFDF MDPPPQDNIL NSMYQLWLLG ALNDVGDLMD LGRKMVKFPL DPALAKLLLM GEKLECLNEV LTIVSMLSVP
701: SVFFRPKDRE AESDAAREKF FVPESDHLTL LNVYQQWKAN EYRGDWCNDH FLQVKGLYKA REIRSQLLDI LKTLKIPLTY CGSDWDVVRK TICSAYFHNA
801: AMLKGIGEYV NCRNRMPCNL HPTSALYGLG YTPDYVVYHE AILTTKEYMQ CVTAVEPHWL AELGPMFFSM GANVDVHTER GIEERHGIDD KVDVLKSILK
901: ISVSSSILAT TWWSRAHSTA NRT
101: VRGNKVQTEF DDDEEERKVI LHVHDIKLPP FLDGRVIFTE QTEPILPIKD AMSDMALISR KGSALVREIH EKQKRDKSRQ RFWELAGSKL GDILGVEKSV
201: DEIDADTVVV GEDGAVDFKG KARFSQHLAV SDFTKSKTIS QQRQNLPIFS VRDELLQVVS ENQVVVIIGE TGSGKTTQLT QYLYEYGYTV NGIIGCTQPR
301: RVAAMSVAKR VSEEMETELG DKVGYAIRFE DATGPSTVIK YMTDGVLLRE TLKDPDLEKY SIILMDEAHE RSLDTDVLFG ILKKVVARRR DFKLIVTSAT
401: LNGEKFSNFF GGVPIFHIPG RTFRVQICYS KTPCEDYVEA AVKQAMTIHI AGAPGDILIF LTGQDEIEAT CYALSERMEQ LISSTKQPVP KLLILPIYSQ
501: LPADLQAKIF QNAEDGARKC IVATNIAETS LTIDGIFYVI DTGYVKMKVY NPRMGMDALQ VFPISRASAD QRAGRAGRTG PGTCYRLYTE NAYENEMLQS
601: PVPEIQQTNL GNVVLLLKSL KIQNLLDFDF MDPPPQDNIL NSMYQLWLLG ALNDVGDLMD LGRKMVKFPL DPALAKLLLM GEKLECLNEV LTIVSMLSVP
701: SVFFRPKDRE AESDAAREKF FVPESDHLTL LNVYQQWKAN EYRGDWCNDH FLQVKGLYKA REIRSQLLDI LKTLKIPLTY CGSDWDVVRK TICSAYFHNA
801: AMLKGIGEYV NCRNRMPCNL HPTSALYGLG YTPDYVVYHE AILTTKEYMQ CVTAVEPHWL AELGPMFFSM GANVDVHTER GIEERHGIDD KVDVLKSILK
901: ISVSSSILAT TWWSRAHSTA NRT
0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
Arabidopsis Description
CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.