Factsheet for Solyc12g089010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039875	Potato	nucleus	95.8	84.07
VIT_01s0010g02920.t01	Wine grape	nucleus	79.38	73.49
CDY23802	Canola	nucleus	42.59	65.71
TraesCS3D01G264900.1	Wheat	plastid	72.84	64.06
Solyc10g076910.1.1	Tomato	nucleus	85.43	53.85
CDX85676	Canola	nucleus	80.25	52.08
Bra023387.1-P	Field mustard	nucleus	80.12	52.0
CDX91151	Canola	nucleus	80.12	51.96
KRH23170	Soybean	nucleus	81.23	51.77
KRH10165	Soybean	nucleus	80.99	51.57
TraesCS2A01G233700.1	Wheat	nucleus	80.37	51.54
TraesCS2B01G249700.1	Wheat	nucleus	80.25	51.46
AT5G13010.1	Thale cress	nucleus	79.63	51.39
HORVU2Hr1G047870.2	Barley	nucleus	80.12	51.39
Os07t0508000-01	Rice	nucleus	80.25	50.78
KXG36287	Sorghum	nucleus	80.25	50.58
Zm00001d006459_P003	Maize	plastid	80.0	48.14
TraesCS2D01G231900.1	Wheat	nucleus	80.25	46.33
Solyc05g015040.2.1	Tomato	nucleus	34.32	39.71
Solyc09g008120.2.1	Tomato	nucleus	34.81	39.66
Solyc01g079250.2.1	Tomato	nucleus	34.57	38.73
Solyc09g097820.2.1	Tomato	nucleus	33.09	38.67
Solyc12g017700.1.1	Tomato	nucleus	41.23	37.7
Solyc03g115390.2.1	Tomato	nucleus	42.22	37.62
Solyc01g110990.2.1	Tomato	nucleus	45.93	33.48
Solyc07g039550.2.1	Tomato	nucleus	46.05	31.34
Solyc01g006970.2.1	Tomato	nucleus	28.15	22.11
Solyc01g006710.2.1	Tomato	mitochondrion	27.53	19.16
Solyc04g007510.2.1	Tomato	plastid	26.91	18.89
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	27.65	18.65
Solyc01g095710.2.1	Tomato	nucleus	30.37	18.34
Solyc07g044930.2.1	Tomato	nucleus	23.7	16.01
Solyc01g103690.2.1	Tomato	nucleus	26.42	14.88
Solyc04g014210.2.1	Tomato	nucleus	28.52	13.35
Solyc11g010310.1.1	Tomato	nucleus	27.41	13.02

Protein Annotations

Gene3D:1.10.10.2130	MapMan:16.4.7.1.6	Gene3D:3.40.50.300	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	InterPro:DUF2075
GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:K4DGX2	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PFAM:PF09848	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF91	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g089010.1
EnsemblPlants:Solyc12g089010.1.1	UniParc:UPI00027695C6	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:64177664..64180275

Molecular Weight (calculated)

91136.6 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.252

Length

810 amino acids

Sequence
(BLAST)

001: MAEKDRRSKS MESRRRKRTS SEEHSYAAAA SSPWDIVAPS PVPIRASDHQ LLRSGAVRGN KVETGFDDDE EERKVILHVC DVKLPPFLDG RVFTDQAELI
101: LPIKDAMSDM AVISRKGSAL VREIHEKQKR DKSRQRFWEL AGSKLGDILG VEKSVDETDA DTVVVGEDGE VDFKGKARFS QHLSVGDFTK SKTISQQRQN
201: LPIFSVRDEL LQVVRENQVV VIIGETGSGK TTQLTQYLYE YGYTVNGIIG CTQPRRVAAM SVAKRVSEEM ESELGDKVGY AIRFEDATGP STVIKYMTDG
301: VLLRETLKDP DLEKYSMILM DEAHERSLDT DVLFGILKKV VARRRDFKLI VTSATLNGEK FSNFFGGVPI FNIPGRTFRV QICHSKTPCE DYVEAAVKQA
401: MTIHIAGAPG DILIFLTGQD EIEATCYALS ERMEQLISST EQPVPKLLIL PIYSQLPADL QAKIFHKAED GARKCIVATN IAETSLTIDG IFYVIDTGYG
501: KMKVYNPCMG MDALQVFPIS RASADQRAGR AGRTGPGTCY RLYTENAYEN EMLQSPVPEI QRTNLGNVVL LLKSLKIQNL LDFDFMDPPP QDNILNSMYQ
601: LWLLGALNDV GDLTDLGRKM VKFPLDPALV LTIVSMLSVP SVFFRPKDRE AESDAAREKF FVPESDHLTL LNVYQQWKAN EYRGDWCNDH FLQVKGLYKA
701: REIRFQLLDI LKTLKIPLTY CGPDWDVVRK TICSTYFHNA AMLKGIGEYV NCRNRMPCNL HPTSALYGLG YTPDYVVYHE AILTTKEYMQ CVTAVEPHWL
801: AELGPMFFSV

Best Arabidopsis Sequence Match ( AT5G13010.1 )
(BLAST)

0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL

Arabidopsis Description

CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.