Factsheet for Solyc01g079250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023284	Potato	nucleus	99.72	99.72
KRH69191	Soybean	nucleus	92.12	92.24
KRH68290	Soybean	nucleus	91.42	91.81
KRG96553	Soybean	nucleus	91.42	91.68
VIT_07s0005g01770.t01	Wine grape	nucleus	90.04	89.42
CDX76626	Canola	nucleus	87.0	87.6
CDX95715	Canola	cytosol	87.69	87.45
Bra000445.1-P	Field mustard	cytosol	87.41	87.41
CDX83337	Canola	cytosol	87.41	87.41
CDY11413	Canola	nucleus	86.72	87.33
Bra007671.1-P	Field mustard	nucleus	86.72	87.33
KXG39505	Sorghum	cytosol	86.58	86.7
TraesCS4A01G124200.2	Wheat	cytosol	86.17	86.65
HORVU4Hr1G052730.3	Barley	cytosol	86.17	86.41
TraesCS4D01G181700.1	Wheat	cytosol	86.17	86.41
TraesCS4B01G180200.1	Wheat	cytosol	86.03	86.27
Zm00001d028923_P002	Maize	nucleus	85.89	86.13
KRH31768	Soybean	cytosol, nucleus	67.91	85.1
Os03t0314100-01	Rice	cytosol, nucleus, plastid	63.49	81.38
Zm00001d047601_P006	Maize	nucleus	85.75	80.21
Bra003744.1-P	Field mustard	nucleus	74.27	80.15
CDY68405	Canola	nucleus	73.86	79.7
GSMUA_Achr1P18470_001	Banana	cytosol	38.87	78.93
AT5G14900.1	Thale cress	cytosol	30.98	74.42
CDX74061	Canola	cytosol	28.49	64.17
Bra001237.1-P	Field mustard	cytosol	37.76	63.19
CDX74059	Canola	nucleus	22.41	61.36
Bra001238.1-P	Field mustard	cytosol, mitochondrion	21.72	59.47
Solyc09g097820.2.1	Tomato	nucleus	42.88	44.73
Solyc09g008120.2.1	Tomato	nucleus	39.7	40.37
Solyc12g017700.1.1	Tomato	nucleus	48.27	39.39
Solyc03g115390.2.1	Tomato	nucleus	49.1	39.05
Solyc05g015040.2.1	Tomato	nucleus	37.62	38.86
Solyc12g089010.1.1	Tomato	nucleus	38.73	34.57
Solyc01g110990.2.1	Tomato	nucleus	49.24	32.04
Solyc07g039550.2.1	Tomato	nucleus	49.52	30.08
Solyc01g006970.2.1	Tomato	nucleus	33.2	23.28
Solyc10g076910.1.1	Tomato	nucleus	41.08	23.11
Solyc04g007510.2.1	Tomato	plastid	32.5	20.36
Solyc01g006710.2.1	Tomato	mitochondrion	32.09	19.93
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	31.95	19.23
Solyc07g044930.2.1	Tomato	nucleus	30.29	18.27
Solyc01g095710.2.1	Tomato	nucleus	32.23	17.38
Solyc01g103690.2.1	Tomato	nucleus	31.4	15.79
Solyc11g010310.1.1	Tomato	nucleus	30.71	13.02
Solyc04g014210.2.1	Tomato	nucleus	29.74	12.43

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ncoils:Coil	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:K4AXH0	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFAM:PF13401
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g079250.2	EnsemblPlants:Solyc01g079250.2.1	UniParc:UPI0002761B3D	SEG:seg

Description

No Description!

Coordinates

chr1:-:78340114..78345947

Molecular Weight (calculated)

82209.1 Da

IEP (calculated)

7.558

GRAVY (calculated)

-0.381

Length

723 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDDSAA KKLNGGLNGG NSMTASINKW NAKPYSQRFY DILEKRKTLP VWHQKEEFLQ ALKSNQTLIL VGETGSGKTT QIPQFVLDAV
101: EVETADKRRK YMIGCTQPRR VAAMSVSRRV AEEMDVVIGE EVGYSIRFED CTSARTVLKY LTDGMLLREA MADPLLERYK VIILDEAHER TLATDVLFGL
201: LKEVLKNRPD LKLVVMSATL EAEKFQGYFF GAPLMKVPGR LHPVEIFYTQ DPERDYLEAA IRTVVQIHTC EPPGDILVFL TGEEEIEDAC RKITKEIGNM
301: GDQVGPVKAV PLYSTLPPAM QQKIFEPAPP PVVEGGPPGR KIVVSTNIAE TSLTIDGIVY VIDPGFAKQK VYNPRVRVES LLVSPISKAS AHQRSGRAGR
401: TQPGKCFRLY TEKSFHNDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDDGNM TRLGEIMSEF PLDPQMGKML
501: VVSPEFNCSN EILSISAMLS VPNCFVRPRE AQKAADEAKN RFGHIDGDHL TLLNVYHAYK QNQEDPQWCY ENFINQRALK SADNVRQQLS RIMARFNLKL
601: CSTDFNSREY YVNIRKAMLA GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CLDHKPEWVI YNEYVLTSRN FIRTVTDIRG EWLVDIAPHY YDLANFPQCE
701: AKRVLERLYK KREREKDESK SKK

Best Arabidopsis Sequence Match ( AT3G62310.1 )
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.