Factsheet for Solyc04g007510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g04360.t01	Wine grape	plastid	78.16	76.38
KRG90929	Soybean	plastid	72.18	73.13
CDY57512	Canola	nucleus	69.76	70.93
AT2G01130.1	Thale cress	nucleus	68.28	70.8
CDY17694	Canola	nucleus	69.58	70.75
Bra024903.1-P	Field mustard	nucleus	69.5	70.66
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	64.21	61.7
Solyc01g006710.2.1	Tomato	mitochondrion	58.93	58.42
Solyc01g006970.2.1	Tomato	nucleus	37.44	41.9
Solyc01g079250.2.1	Tomato	nucleus	20.36	32.5
Solyc05g015040.2.1	Tomato	nucleus	18.98	31.29
Solyc09g008120.2.1	Tomato	nucleus	18.72	30.38
Solyc09g097820.2.1	Tomato	nucleus	17.85	29.73
Solyc07g044930.2.1	Tomato	nucleus	29.55	28.44
Solyc12g089010.1.1	Tomato	nucleus	18.89	26.91
Solyc03g115390.2.1	Tomato	nucleus	20.97	26.62
Solyc12g017700.1.1	Tomato	nucleus	20.19	26.3
Solyc01g103690.2.1	Tomato	nucleus	31.63	25.38
Solyc01g110990.2.1	Tomato	nucleus	21.66	22.5
Solyc07g039550.2.1	Tomato	nucleus	21.92	21.26
Solyc10g076910.1.1	Tomato	nucleus	21.49	19.3
Solyc01g095710.2.1	Tomato	nucleus	19.58	16.85
Solyc11g010310.1.1	Tomato	nucleus	20.88	14.13
Solyc04g014210.2.1	Tomato	nucleus	20.28	13.53

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014720	UniProt:K4BNQ8	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	PFscan:PS50137	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF146	SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
SUPFAM:SSF54768	EnsemblPlantsGene:Solyc04g007510.2	EnsemblPlants:Solyc04g007510.2.1	UniParc:UPI00027669C0	InterPro:dsRBD_dom	SEG:seg

Description

No Description!

Coordinates

chr4:+:1184948..1200116

Molecular Weight (calculated)

130258.0 Da

IEP (calculated)

7.286

GRAVY (calculated)

-0.311

Length

1154 amino acids

Sequence
(BLAST)

0001: MKDRPLSSCG AVYVPPHQRL RSVITVPSAV SPQPGSLRPT AIDQKRNPNI FKSYPCLPPQ QQTVRLQHKR SSQFDEVSEE GGDIELTPYQ GAVASDNAEI
0101: WKWKLTALLQ NNDIQEVLSR EKKDRRDYEQ IAALASKMGL YSNLYSKVIV VSKLPLPNYR FDLDDKRPQR EVILPPGLPR RVDVFLGEYL SRKPRSTDVL
0201: SRSSSNGSIA TDEGLFEQSE ALPQSKASMK KIHWERSMQM QTEQQTWQES PEGRKMLEFR CSLPAYKEKD AILSAISQNQ VVIVSGETGC GKTTQIPQFI
0301: LESEIEYIRG DMCSIICTQP RRISVMAVSE RVAAERGELL GETVGYKVRL EGVKGRDTHL LFCTTGILLR RLLVDRNLKG ITHVIVDEIH ERGMNEDFLL
0401: IVLKDLLPRR PELRLILMSA TLDAELFSSY FNGAPLVHIP GFTYPVHTHF LENILEMSGY RLTPDNQIDD YGQERTWKMN KQAPRKRKSQ IASAVEDTLR
0501: SADFQEFSPE TQESLSCWNP DCIGFNFIEY ILCHICENER PGAVLVFMTG WDDISSLKDK LQSHPILGNT SRVLLLACHG SMASSEQRLI FDKPEDGVRK
0601: IVLATNIAET SITIDDVVFV IDCGKAKETS YDALNNTPRL LPSWISKVSA RQRRGRAGRV QPGECYHLYP RCVYDAFADY QLPEILRTPL QSLCLQIKSL
0701: KLGSISEFLK RALQSPELLA VQNAVEYLKI IGALDENENL TVLGRYLTML PMEPKLGKML ILGAILNCLD PILTIVAGLS VRDPFLTPLD KKDLADAAKA
0801: HFSRDFSDHL ALVRAYEGWR DAERDLAGYE YCWKNFLSAQ SMKAIDSLRK EFYSLLNDTG LVDSNITMYN SWSYDEHLLR AIICYGLYPG ICSVLHNEKS
0901: FSLKTMEDGQ VLLHSNSVNA RDSRIPYPWL VFNEKIKVNS VFLRDSTAIS DSVLLLFGGT ISKGEVDGHL KMLGGYLEFF MNPTIAEMYR SLRRELDELI
1001: HTKLLNPRMD VHSYHELLSA IRLLISEDQC GGRFVFSHQI LLPSKPCAGA PTPAPTSRIE SGPGGDNAKS QLQTLLNRAG YATPTYKSLQ LNNNQFRATV
1101: EFNGMQIMGR PCNNKKQAEK DAAAEALEWL LEGHRAGPDY IEQMSQFLKK SKKA

Best Arabidopsis Sequence Match ( AT2G01130.1 )
(BLAST)

0001: MTNRLPPSLY VPPHQRLGSD YGFNPVPLSP VRYVSAYDDR VSEDRQPQEG TFHCADLDDW NKRFSMLLKD SLKQEVISRE KKDRRDFDKL AALATTLGLY
0101: SHAYAKVVVF SKIPLPNYRF DLDDKKPQRE VNLHTDLLQR VEAYLTEYLS KSSNRIDRVP ANSVSRTSSI SSTDEWFSEQ PLPISATKIL WQRSLQLRDR
0201: QQYWQASVEG QRMLDSRTSL PAFKQRHSVL TAISQNQVIV ISGETGCGKT TQIPQFILES EIEANRGAFS SIICTQPRRI SAMSVSERVA YERGEQLGES
0301: VGYKVRLEGV KGRDTRLLFC TTGILLRRLL VDRNLRGVTH VIVDEIHERG MNEDFLLIIL KDLLSRRSEL KLILMSATLD AELFSSYFGG AGVIYIPGFT
0401: YPVRSHFLED ILEMTRYRLT PYNQIDDYGQ ERTWKMNKQI PKKRKSQITF VVEDALRAAD FKEFSPETRE SLSCWYPDCI GFNLIEFLLC NICENEGPGG
0501: ILIFLTGWDD ISSLKEKLQI HPIFGNPDLV MLLACHGSME TFEQRLIFEE PASGVRKIVL ATNIAETSIT INDVAFVIDC GKAKETSYDA LNNTPCLLPS
0601: WISKVSAQQR RGRAGRVRPG QCYHLYPKCV YDAFAEYQLP EILRTPLHSL CLQIKSLNLG SISEFLSRAL QSPELLAVQK AIAFLKIIGA LDENEDLTTL
0701: GRYLSKLPME PKLGKMLILG AILGCLDPIL TVAAGLSVRD PFLTPQDKKD LAEAAKSQFS RDHSDHLALV RAYEGWKKAE EESAVYDYCW KNFLSIQSLR
0801: AIDSLRKEFF SLLKDTGLID GNPSICNSEG NDANLTRAVI CYGMYPGICS VVHNERSFSL KTMEDGQVLL YSNSENARET KIPYPWLVFN EKIKVNSVFL
0901: RDSTACSDST LILFGGSISK GDTDGHLKML GGYLEFFMKP DVAEIYQTLK KELDELIQNK LLNPKVDMQA HRELLSAIRL LVSEDGCDGR FVFGHQILRP
1001: LEISALSTKP SLFSRTESGP GGDNSKSQLQ TILTRAGYTV PMYKTKQLKN NKFQTTVEFN ETQIMGQPCS NKKSAEKDAA AEAIQWLKGG AKESHEQVNH
1101: MSKLLKKGKK DHL

Arabidopsis Description

DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4IM84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.