Factsheet for AT2G01130.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57512	Canola	nucleus	85.89	84.23
CDY17694	Canola	nucleus	85.0	83.35
Bra024903.1-P	Field mustard	nucleus	84.91	83.26
VIT_01s0011g04360.t01	Wine grape	plastid	74.03	69.77
KRH38164	Soybean	nucleus	68.64	69.33
Solyc04g007510.2.1	Tomato	plastid	70.8	68.28
AT1G48650.2	Thale cress	nucleus, plastid	63.61	58.71
AT5G04895.1	Thale cress	mitochondrion	57.5	55.12
AT2G35920.3	Thale cress	plastid	38.63	41.87
AT2G47250.1	Thale cress	nucleus	20.66	31.55
AT1G27900.1	Thale cress	nucleus	19.59	31.14
AT3G62310.1	Thale cress	nucleus	20.13	30.85
AT1G26370.1	Thale cress	plastid	19.32	29.99
AT4G18465.1	Thale cress	nucleus	18.69	29.93
AT4G16680.2	Thale cress	nucleus	20.66	28.89
AT2G30800.1	Thale cress	nucleus	29.29	25.1
AT1G58060.1	Thale cress	nucleus	32.7	24.95
AT1G32490.1	Thale cress	cytosol	22.37	23.85
AT1G58050.1	Thale cress	nucleus	30.01	23.57
AT5G14900.1	Thale cress	cytosol	6.29	23.26
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	21.29	22.7
AT3G26560.1	Thale cress	nucleus	21.83	20.8
AT1G06670.1	Thale cress	nucleus	28.75	20.3
AT5G13010.1	Thale cress	nucleus	22.28	19.76
AT1G33390.2	Thale cress	nucleus	20.04	18.03
AT5G10370.1	Thale cress	nucleus	22.64	14.2
AT4G01020.1	Thale cress	nucleus	22.19	13.82

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:814642	ProteinID:AAD14515.3
ProteinID:AAM15307.1	ProteinID:AEC05405.1	ArrayExpress:AT2G01130	EnsemblPlantsGene:AT2G01130	RefSeq:AT2G01130	TAIR:AT2G01130
RefSeq:AT2G01130-TAIR-G	EnsemblPlants:AT2G01130.1	TAIR:AT2G01130.1	Unigene:At.42514	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF1605	UniProt:F4IM84	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720
RefSeq:NP_178223.2	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF146	SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
SUPFAM:SSF54768	UniParc:UPI00005DC2AE	InterPro:dsRBD_dom	SEG:seg	:	:

Description

DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4IM84]

Coordinates

chr2:-:88320..94753

Molecular Weight (calculated)

125756.0 Da

IEP (calculated)

7.695

GRAVY (calculated)

-0.309

Length

1113 amino acids

Sequence
(BLAST)

0001: MTNRLPPSLY VPPHQRLGSD YGFNPVPLSP VRYVSAYDDR VSEDRQPQEG TFHCADLDDW NKRFSMLLKD SLKQEVISRE KKDRRDFDKL AALATTLGLY
0101: SHAYAKVVVF SKIPLPNYRF DLDDKKPQRE VNLHTDLLQR VEAYLTEYLS KSSNRIDRVP ANSVSRTSSI SSTDEWFSEQ PLPISATKIL WQRSLQLRDR
0201: QQYWQASVEG QRMLDSRTSL PAFKQRHSVL TAISQNQVIV ISGETGCGKT TQIPQFILES EIEANRGAFS SIICTQPRRI SAMSVSERVA YERGEQLGES
0301: VGYKVRLEGV KGRDTRLLFC TTGILLRRLL VDRNLRGVTH VIVDEIHERG MNEDFLLIIL KDLLSRRSEL KLILMSATLD AELFSSYFGG AGVIYIPGFT
0401: YPVRSHFLED ILEMTRYRLT PYNQIDDYGQ ERTWKMNKQI PKKRKSQITF VVEDALRAAD FKEFSPETRE SLSCWYPDCI GFNLIEFLLC NICENEGPGG
0501: ILIFLTGWDD ISSLKEKLQI HPIFGNPDLV MLLACHGSME TFEQRLIFEE PASGVRKIVL ATNIAETSIT INDVAFVIDC GKAKETSYDA LNNTPCLLPS
0601: WISKVSAQQR RGRAGRVRPG QCYHLYPKCV YDAFAEYQLP EILRTPLHSL CLQIKSLNLG SISEFLSRAL QSPELLAVQK AIAFLKIIGA LDENEDLTTL
0701: GRYLSKLPME PKLGKMLILG AILGCLDPIL TVAAGLSVRD PFLTPQDKKD LAEAAKSQFS RDHSDHLALV RAYEGWKKAE EESAVYDYCW KNFLSIQSLR
0801: AIDSLRKEFF SLLKDTGLID GNPSICNSEG NDANLTRAVI CYGMYPGICS VVHNERSFSL KTMEDGQVLL YSNSENARET KIPYPWLVFN EKIKVNSVFL
0901: RDSTACSDST LILFGGSISK GDTDGHLKML GGYLEFFMKP DVAEIYQTLK KELDELIQNK LLNPKVDMQA HRELLSAIRL LVSEDGCDGR FVFGHQILRP
1001: LEISALSTKP SLFSRTESGP GGDNSKSQLQ TILTRAGYTV PMYKTKQLKN NKFQTTVEFN ETQIMGQPCS NKKSAEKDAA AEAIQWLKGG AKESHEQVNH
1101: MSKLLKKGKK DHL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.