Factsheet for AT2G47250.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83337	Canola	cytosol	94.65	95.44
Bra000445.1-P	Field mustard	cytosol	94.65	95.44
CDX95715	Canola	cytosol	94.51	95.03
AT3G62310.1	Thale cress	nucleus	92.18	92.56
TraesCS4A01G124200.2	Wheat	cytosol	86.83	88.04
HORVU4Hr1G052730.3	Barley	cytosol	86.97	87.93
TraesCS4D01G181700.1	Wheat	cytosol	86.83	87.79
TraesCS4B01G180200.1	Wheat	cytosol	86.69	87.66
KXG39505	Sorghum	cytosol	86.01	86.84
Zm00001d028923_P002	Maize	nucleus	85.6	86.55
Os03t0314100-01	Rice	cytosol, nucleus, plastid	63.65	82.27
Zm00001d047601_P006	Maize	nucleus	84.91	80.08
GSMUA_Achr1P18470_001	Banana	cytosol	38.27	78.37
AT5G14900.1	Thale cress	cytosol	30.86	74.75
AT4G18465.1	Thale cress	nucleus	41.84	43.88
AT4G16680.2	Thale cress	nucleus	46.09	42.21
AT1G26370.1	Thale cress	plastid	40.19	40.86
AT1G27900.1	Thale cress	nucleus	37.86	39.43
AT1G32490.1	Thale cress	cytosol	47.05	32.85
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	46.78	32.66
AT3G26560.1	Thale cress	nucleus	49.38	30.82
AT2G35920.3	Thale cress	plastid	33.06	23.47
AT5G13010.1	Thale cress	nucleus	39.92	23.19
AT2G01130.1	Thale cress	nucleus	31.55	20.66
AT1G48650.2	Thale cress	nucleus, plastid	32.78	19.82
AT5G04895.1	Thale cress	mitochondrion	31.41	19.72
AT1G33390.2	Thale cress	nucleus	33.2	19.56
AT2G30800.1	Thale cress	nucleus	29.36	16.47
AT1G58060.1	Thale cress	nucleus	30.18	15.08
AT1G58050.1	Thale cress	nucleus	29.22	15.03
AT5G10370.1	Thale cress	nucleus	31.0	12.73
AT1G06670.1	Thale cress	nucleus	27.43	12.69
AT4G01020.1	Thale cress	nucleus	31.0	12.65

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	EntrezGene:819338	ProteinID:AAB63825.1	ProteinID:AEC10820.1
ArrayExpress:AT2G47250	EnsemblPlantsGene:AT2G47250	RefSeq:AT2G47250	TAIR:AT2G47250	RefSeq:AT2G47250-TAIR-G	EnsemblPlants:AT2G47250.1
TAIR:AT2G47250.1	EMBL:AY128301	Unigene:At.36388	EMBL:BT004534	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009536	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	RefSeq:NP_182247.1	UniProt:O22899	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
UniParc:UPI00000014E0	SEG:seg	:	:	:	:

Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]

Coordinates

chr2:-:19399648..19403044

Molecular Weight (calculated)

82658.3 Da

IEP (calculated)

7.338

GRAVY (calculated)

-0.385

Length

729 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.