Factsheet for TraesCS4A01G124200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373200.1
TraesCS1B01G393400.2
TraesCS1D01G380000.2
TraesCS3A01G260500.1
TraesCS3B01G293600.1
TraesCS3D01G260700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62310.1	TraesCS1A01G373200.1	AT1G17970.1	21798944
AT3G62310.1	TraesCS1B01G393400.2	AT1G17970.1	21798944
AT3G62310.1	TraesCS1D01G380000.2	AT1G17970.1	21798944
AT3G62310.1	TraesCS3A01G260500.1	AT1G17970.1	21798944
AT3G62310.1	TraesCS3B01G293600.1	AT1G17970.1	21798944
AT3G62310.1	TraesCS3D01G260700.1	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G181700.1	Wheat	cytosol	99.86	99.58
HORVU4Hr1G052730.3	Barley	cytosol	99.72	99.45
TraesCS4B01G180200.1	Wheat	cytosol	99.72	99.45
KXG39505	Sorghum	cytosol	95.97	95.57
Zm00001d028923_P002	Maize	nucleus	94.99	94.73
Os03t0314100-01	Rice	cytosol, nucleus, plastid	71.35	90.96
KRG96553	Soybean	nucleus	88.6	88.35
Zm00001d047601_P006	Maize	nucleus	94.85	88.23
KRH68290	Soybean	nucleus	88.32	88.19
KRH69191	Soybean	nucleus	88.18	87.81
CDX83337	Canola	cytosol	88.18	87.69
Bra000445.1-P	Field mustard	cytosol	88.18	87.69
VIT_07s0005g01770.t01	Wine grape	nucleus	88.73	87.64
CDX76626	Canola	nucleus	86.93	87.05
CDX95715	Canola	cytosol	87.76	87.03
AT2G47250.1	Thale cress	nucleus	88.04	86.83
Bra007671.1-P	Field mustard	nucleus	86.51	86.63
CDY11413	Canola	nucleus	86.51	86.63
PGSC0003DMT400023284	Potato	nucleus	86.79	86.31
Solyc01g079250.2.1	Tomato	nucleus	86.65	86.17
AT3G62310.1	Thale cress	nucleus	86.93	86.09
GSMUA_Achr1P18470_001	Banana	cytosol	41.03	82.87
KRH31768	Soybean	cytosol, nucleus	65.37	81.46
Bra003744.1-P	Field mustard	nucleus	74.55	80.0
CDY68405	Canola	nucleus	73.85	79.25
AT5G14900.1	Thale cress	cytosol	30.32	72.43
CDX74061	Canola	cytosol	29.21	65.42
CDX74059	Canola	nucleus	23.5	64.02
Bra001237.1-P	Field mustard	cytosol	37.97	63.19
Bra001238.1-P	Field mustard	cytosol, mitochondrion	22.95	62.5
TraesCS3A01G131800.1	Wheat	nucleus	41.72	42.8
TraesCS7A01G156700.1	Wheat	plastid	40.61	40.95
TraesCS4A01G239500.2	Wheat	nucleus	36.72	37.45
TraesCS1A01G243400.1	Wheat	nucleus	47.71	32.36
TraesCS4A01G158200.1	Wheat	nucleus	50.21	29.25
TraesCS1A01G151100.1	Wheat	nucleus	33.94	23.71
TraesCS2A01G233700.1	Wheat	nucleus	40.75	23.2
TraesCS5A01G387700.2	Wheat	golgi, nucleus	32.13	20.0
TraesCS6A01G178200.1	Wheat	nucleus	32.41	18.96
TraesCS3A01G021300.1	Wheat	extracellular	32.41	18.73
TraesCS6A01G299400.2	Wheat	nucleus	32.27	17.5
TraesCS3A01G298900.1	Wheat	nucleus	28.09	17.19
TraesCS2A01G304100.1	Wheat	nucleus, plastid	29.21	14.7
TraesCS5A01G074100.1	Wheat	nucleus	30.88	13.21
TraesCS3A01G111000.1	Wheat	nucleus	30.04	12.31
TraesCS2A01G164100.1	Wheat	nucleus	31.02	12.31

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:DUF1605	GO:GO:0003674
GO:GO:0003824	GO:GO:0004386	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFAM:PF13401	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4A01G124200	EnsemblPlants:TraesCS4A01G124200.2	TIGR:cd00046
TIGR:cd00079	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:157320655..157323785

Molecular Weight (calculated)

81480.2 Da

IEP (calculated)

7.544

GRAVY (calculated)

-0.344

Length

719 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDETSV SAKLGRAGIN GAAAAANPSI NRWNGRPYSA RYLEILEKRR TLPVWQQKDE FLRVLRDNQT LILVGETGSG KTTQIPQFVL
101: EAEGLSNRSM VACTQPRRVA AMSVSRRVAE EMDVTIGEEV GYSIRFEDCS SHKTVLKYLT DGMLLREAMA DPLLERYKVI VLDEAHERTL ATDVLFGLLK
201: EVLKNRPDLK LVVMSATLEA EKFQGYFSGA PLMKVPGRLH PVEIFYTQEP ERDYLEAAIR TVVQIHMCEP AGDILVFLTG EEEIEDACRK INKEVNNMGD
301: QVGPVKVVPL YSTLPPAMQQ KIFDPAPPPL KEGGPAGRKI VVSTNIAETS LTIDGIVYVI DPGFSKQKVY NPRIRVESLL VSPISKASAH QRAGRAGRTQ
401: PGKCFRLYTE KSFNGDLQPQ TYPEILRSNL ANTVLTLKKL GIDDLVHFDF MDPPAPETLM RALEVLNYLG ALDDEGNLTS LGEMMSEFPL DPQMSKMLVI
501: SPRYNCSNEI LSISAMLSVP NCFLRPREAQ KAADEAKARF GHIDGDHLTL LNVYHAYKQN NEDPTWCYEN FVNARAMKSA DNVRQQLVRI MTRFNLKMCS
601: TDFNSREYYV NIRKAMLSGY FMQVAHLERT GHYLTVKDNQ VVHLHPSNCM DHKPEWVIYN EYVLTTRNFI RTVTDIRGEW LIDIAPQYYD LTNFPSCEAK
701: RVLERLHNKR ERERAASRN

Best Arabidopsis Sequence Match ( AT2G47250.1 )
(BLAST)

001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.