Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G337600.3 | Wheat | nucleus | 97.19 | 95.56 |
| TraesCS3D01G302800.2 | Wheat | plastid | 97.19 | 89.64 |
| HORVU3Hr1G074660.7 | Barley | plastid | 90.89 | 83.83 |
| Os01t0767700-01 | Rice | nucleus | 80.51 | 77.35 |
| EES01523 | Sorghum | nucleus | 78.55 | 77.24 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 77.96 | 70.46 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 60.85 | 63.5 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 62.47 | 59.63 |
| Solyc07g044930.2.1 | Tomato | nucleus | 59.4 | 58.22 |
| KRH73592 | Soybean | nucleus | 56.34 | 56.97 |
| KRH14525 | Soybean | nucleus | 56.09 | 56.62 |
| CDY10756 | Canola | nucleus | 50.38 | 54.36 |
| Bra021665.1-P | Field mustard | nucleus | 55.74 | 50.19 |
| AT2G30800.1 | Thale cress | nucleus | 55.32 | 50.04 |
| CDX97797 | Canola | nucleus | 54.72 | 49.81 |
| CDY29644 | Canola | nucleus | 55.23 | 49.66 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 53.96 | 48.03 |
| CDY10215 | Canola | nucleus | 50.21 | 45.95 |
| AT1G06670.1 | Thale cress | nucleus | 51.32 | 38.26 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 26.89 | 30.71 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 17.19 | 28.09 |
| TraesCS7A01G156700.1 | Wheat | plastid | 16.43 | 27.07 |
| TraesCS3A01G021300.1 | Wheat | extracellular | 27.23 | 25.72 |
| TraesCS4A01G239500.2 | Wheat | nucleus | 15.4 | 25.67 |
| TraesCS3A01G131800.1 | Wheat | nucleus | 15.23 | 25.54 |
| TraesCS5A01G387700.2 | Wheat | golgi, nucleus | 25.02 | 25.45 |
| TraesCS2A01G304100.1 | Wheat | nucleus, plastid | 25.19 | 20.71 |
| TraesCS1A01G243400.1 | Wheat | nucleus | 17.45 | 19.34 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 18.21 | 17.34 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 17.87 | 16.63 |
| TraesCS6A01G178200.1 | Wheat | nucleus | 16.0 | 15.3 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 17.11 | 15.16 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 16.94 | 11.85 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 17.36 | 11.63 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 17.62 | 11.43 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Ankyrin_rpt |
| InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 |
| InterPro:IPR002110 | InterPro:IPR014001 | InterPro:IPR020683 | InterPro:IPR036770 | InterPro:IPR036867 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01424 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50088 |
| PFscan:PS50297 | PFscan:PS51061 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 |
| InterPro:R3H_DEXH_helicase | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF48403 | SUPFAM:SSF52540 | SUPFAM:SSF82708 | EnsemblPlantsGene:TraesCS3A01G298900 | EnsemblPlants:TraesCS3A01G298900.1 |
| TIGR:cd00046 | TIGR:cd00079 | TIGR:cd00204 | TIGR:cd06007 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:-:533069784..533080811
Molecular Weight (calculated)
128723.0 Da
IEP (calculated)
7.735
GRAVY (calculated)
-0.296
Length
1175 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRKGPKGPK GAKANADALT KAALAAMSEE TTVRITTVLE DFRASDAQVH TFEPSLTNQE RAAVHAMCKK MGMISKSKGY GERRCLSVYK TKNTQAPGKE
0101: EGPSKLGFSE EARQILLDLF THYPPDDAEL NGDAVKNPGD KAAKIRWKTD TAFSRPAMQK HDIAKKVKML TSKLSDPRQL RKIGEDRSKL PIASFKDHIS
0201: STLENHQVVL ISGETGCGKT TQVPQYILDH VWGKGESCKI ICTQPRRISA MSVAERISVE RGETVGDTVG YKIRLESKGG KNSSIIFCTN GVLLRVLIGR
0301: VTNSSNRQRA ADDVIMGITH IIVDEIHERD RFSDFMLAIL RDLLPMYPHL HLVLMSATID AERFSQYFNG CPVIRVPGHT YPVKTFYLED VLSILQSVGD
0401: NHLNPETNDL GLDSVLTDDY KSSMDEAISM ALASDEFDLL IELISIEQNP EIFNYQHSET GVTPLMVFAR KGQLGDVCML LSFGVDCSAR DHDGKSALDW
0501: AQQENQVEAY EVIKKHMDCS PAKLPEENEL LKKYLATINP EHIDTVLIER LLRKICTDSN EGAILVFLPG WEDINQTRER LLASSFRDSS KFLVLSLHSM
0601: IPSSEQKKVF KRAPAGVRKI ILSTNIAETA VTIDDIVFVL DSGRMKEKSY DPYNNVSTLH TSWVSRANAR QREGRAGRCQ PGICYHLYSR FRAASLPEFQ
0701: IPEIKRMPIE ELCLQVKLLD PNSKIDLGAL TQNEQLTDLG EKLGSLPVHP STSKMLLFGI LMNCLDPALT LACAADYRDP FVLPMAPDER KRAAAAKVEL
0801: ASLYGGYSDQ LAVVAAFDCW TCAKEKGQEA LFCSKYFVAS NTMNMLSSMR KQLHSELAQR GFLPADTSAC SLNAKVPGII SAVLVAGAYP MVGRLLPPRK
0901: NARRAVVETA SGAKVRLHPH SSNFNLSFNK SSGNPLMVFD EITRGDGGMY VKNCSVVGSY PLLLLATEIA VAPPDDVSDE DDEGSSGDEA GKSTLGQQKE
1001: EIMSSPDNTV SVVVDRWLRF DATALDVAQI YCLRERLASA ILFKVKHPQD VLPPALGATM YAIACILSYD GLPGNLATKH GSGQSSADAS GSAEGRKGGF
1101: IPPGGFLMSL LSDIPPNAPH HQKSSNHPGG GSGHIRSSRA PAGRFNQSQQ RPGRNSSGPG SSASQSFKRQ RDAAR
0101: EGPSKLGFSE EARQILLDLF THYPPDDAEL NGDAVKNPGD KAAKIRWKTD TAFSRPAMQK HDIAKKVKML TSKLSDPRQL RKIGEDRSKL PIASFKDHIS
0201: STLENHQVVL ISGETGCGKT TQVPQYILDH VWGKGESCKI ICTQPRRISA MSVAERISVE RGETVGDTVG YKIRLESKGG KNSSIIFCTN GVLLRVLIGR
0301: VTNSSNRQRA ADDVIMGITH IIVDEIHERD RFSDFMLAIL RDLLPMYPHL HLVLMSATID AERFSQYFNG CPVIRVPGHT YPVKTFYLED VLSILQSVGD
0401: NHLNPETNDL GLDSVLTDDY KSSMDEAISM ALASDEFDLL IELISIEQNP EIFNYQHSET GVTPLMVFAR KGQLGDVCML LSFGVDCSAR DHDGKSALDW
0501: AQQENQVEAY EVIKKHMDCS PAKLPEENEL LKKYLATINP EHIDTVLIER LLRKICTDSN EGAILVFLPG WEDINQTRER LLASSFRDSS KFLVLSLHSM
0601: IPSSEQKKVF KRAPAGVRKI ILSTNIAETA VTIDDIVFVL DSGRMKEKSY DPYNNVSTLH TSWVSRANAR QREGRAGRCQ PGICYHLYSR FRAASLPEFQ
0701: IPEIKRMPIE ELCLQVKLLD PNSKIDLGAL TQNEQLTDLG EKLGSLPVHP STSKMLLFGI LMNCLDPALT LACAADYRDP FVLPMAPDER KRAAAAKVEL
0801: ASLYGGYSDQ LAVVAAFDCW TCAKEKGQEA LFCSKYFVAS NTMNMLSSMR KQLHSELAQR GFLPADTSAC SLNAKVPGII SAVLVAGAYP MVGRLLPPRK
0901: NARRAVVETA SGAKVRLHPH SSNFNLSFNK SSGNPLMVFD EITRGDGGMY VKNCSVVGSY PLLLLATEIA VAPPDDVSDE DDEGSSGDEA GKSTLGQQKE
1001: EIMSSPDNTV SVVVDRWLRF DATALDVAQI YCLRERLASA ILFKVKHPQD VLPPALGATM YAIACILSYD GLPGNLATKH GSGQSSADAS GSAEGRKGGF
1101: IPPGGFLMSL LSDIPPNAPH HQKSSNHPGG GSGHIRSSRA PAGRFNQSQQ RPGRNSSGPG SSASQSFKRQ RDAAR
0001: MAKKKKDTKH TRLCEATGAW ATKVLEDFRA SGNDSYVFEQ QLTNSERGII HQMCRTMGLR SKSNGSGEER RLSLFKGDGI SKSDKRRMYE ARNQKEKEGD
0101: GISKSYSKHR YETRFQKAGG IRKTRISPKK LKCVSFPPEA KAVLHDLFTR YPPCDGDTTG TSLGIYTTGN VNSNWKDDFF KKPHMTKHDI ENNVVSLSSR
0201: LKKERHFREI FEARSKLPIA SFRDAIISAV ESNQVVLIAG ETGCGKTTQV PQYLLDHMWH SKKEACKIIC TQPRRISAIS VSDRISWERG ETIGRTVGYK
0301: VRLQSEGGRE SSVVFCTNGI LLRVLIGKGV NSSVPDITHI IVDEIHERDS YSDFMLMILR DLLPSNPHLR LILMSATLDA ERFSEYFGGC PVVRVPGFTY
0401: PVRTFFLDDA LSVLNSDKNS HLLSAVKRDF KDEDKVSLDE AIDLAWTNDE FDCLVDLVSS EGSHEAYNYQ NSTTGLTPLM VFAGKGRVSD VCKLLSVGAD
0501: CTLKSKEGIT ALELAEKENQ FETAQIIREH AGNIQSNSQQ AQDLLDKYMA TIKPEEVDVG LIVKLMKKIC SDSKDGAILV FLPGWEEISK TKEKLLDDRF
0601: FAHSAKFIIL CLHSRVPAEE QKKVFNRPPR GCRKIVLATN IAESAVTIDD VVYVIDSGRM KEKSYDPYND VSTLQSSWVS KANAKQRAGR AGRCQAGICY
0701: HLYSKLRAAS LPEYRVPEVM RMPVDELCLQ VKMLDPNCNV NDFLQKLMDP PVAQSIENAL IILKDIGALT PEEELTELGQ KFGQLPVHPR ISKMIYFAIL
0801: VNCLDPALIL ACAADEKDPF TMPLSPGDRK KAAAAKHELA SLYGDHSDHL ATVAAFQCWK NAKASGQAKE FCSKYFISQV VMKRLDDLCR KLQGELNRHG
0901: VIPSSSSNCS LNAHDPGILR AVIAVGLYPM LGRMCPLSKN RTRSVIETIA GAKVRVPSLS NNVDMSSTKF DEALIVFDEI TRGDWGVVIR SCTVLPTIPV
1001: LLFSREIAVS TTESYDAVKS DDEEDHKVGN VGDAMDIDKE VGRPGEKIML GPENSVKVVV DRWLPFKVTA FEIAQMYILR ERLMASILFK VKHPKENLPP
1101: HLGASMYAIA SVLSYDSLAQ SSVQTVAVQP ITSVVDATSP RDDIPSTNPN ELREHDPNTT PMGSKLELAN KLGLGNMEES LPSNFADGNE QPDPNTSPVE
1201: DVSAATKQKK MQSESKRCKS LNNVDLGNIE ENFGNMEENP PSDLAIGNEQ TLPKLASNLD MGNMEENTPS DLANGNEKTE PNSANSMDLG NMEENTPSDL
1301: ANGNKKKEPK SVSKLDLGSE KVSIPSNLVN GNEQHDLNIA PGEDASAAKQ PEKKRSRSKK RKSGNNLDLG KMEKSKPSDL ANENEQTEPK SANNLDLGNM
1401: KENTPSDLAN ENEQTELRLP NNSDYGNMEE SLPLNLANGD EQPDPTTAPM EAAKQPKKKR SRSKKCKSVN NLDLGNMEEN KPSDLANGNE QKDPESVNRL
1501: DPGKEKESIP SNLVSGNEQP DSNTAPAKKP KKKKRKLANN FDSVNNMEEK MPSTNVLSQG NKSGLIEEKP SIPSDQ
0101: GISKSYSKHR YETRFQKAGG IRKTRISPKK LKCVSFPPEA KAVLHDLFTR YPPCDGDTTG TSLGIYTTGN VNSNWKDDFF KKPHMTKHDI ENNVVSLSSR
0201: LKKERHFREI FEARSKLPIA SFRDAIISAV ESNQVVLIAG ETGCGKTTQV PQYLLDHMWH SKKEACKIIC TQPRRISAIS VSDRISWERG ETIGRTVGYK
0301: VRLQSEGGRE SSVVFCTNGI LLRVLIGKGV NSSVPDITHI IVDEIHERDS YSDFMLMILR DLLPSNPHLR LILMSATLDA ERFSEYFGGC PVVRVPGFTY
0401: PVRTFFLDDA LSVLNSDKNS HLLSAVKRDF KDEDKVSLDE AIDLAWTNDE FDCLVDLVSS EGSHEAYNYQ NSTTGLTPLM VFAGKGRVSD VCKLLSVGAD
0501: CTLKSKEGIT ALELAEKENQ FETAQIIREH AGNIQSNSQQ AQDLLDKYMA TIKPEEVDVG LIVKLMKKIC SDSKDGAILV FLPGWEEISK TKEKLLDDRF
0601: FAHSAKFIIL CLHSRVPAEE QKKVFNRPPR GCRKIVLATN IAESAVTIDD VVYVIDSGRM KEKSYDPYND VSTLQSSWVS KANAKQRAGR AGRCQAGICY
0701: HLYSKLRAAS LPEYRVPEVM RMPVDELCLQ VKMLDPNCNV NDFLQKLMDP PVAQSIENAL IILKDIGALT PEEELTELGQ KFGQLPVHPR ISKMIYFAIL
0801: VNCLDPALIL ACAADEKDPF TMPLSPGDRK KAAAAKHELA SLYGDHSDHL ATVAAFQCWK NAKASGQAKE FCSKYFISQV VMKRLDDLCR KLQGELNRHG
0901: VIPSSSSNCS LNAHDPGILR AVIAVGLYPM LGRMCPLSKN RTRSVIETIA GAKVRVPSLS NNVDMSSTKF DEALIVFDEI TRGDWGVVIR SCTVLPTIPV
1001: LLFSREIAVS TTESYDAVKS DDEEDHKVGN VGDAMDIDKE VGRPGEKIML GPENSVKVVV DRWLPFKVTA FEIAQMYILR ERLMASILFK VKHPKENLPP
1101: HLGASMYAIA SVLSYDSLAQ SSVQTVAVQP ITSVVDATSP RDDIPSTNPN ELREHDPNTT PMGSKLELAN KLGLGNMEES LPSNFADGNE QPDPNTSPVE
1201: DVSAATKQKK MQSESKRCKS LNNVDLGNIE ENFGNMEENP PSDLAIGNEQ TLPKLASNLD MGNMEENTPS DLANGNEKTE PNSANSMDLG NMEENTPSDL
1301: ANGNKKKEPK SVSKLDLGSE KVSIPSNLVN GNEQHDLNIA PGEDASAAKQ PEKKRSRSKK RKSGNNLDLG KMEKSKPSDL ANENEQTEPK SANNLDLGNM
1401: KENTPSDLAN ENEQTELRLP NNSDYGNMEE SLPLNLANGD EQPDPTTAPM EAAKQPKKKR SRSKKCKSVN NLDLGNMEEN KPSDLANGNE QKDPESVNRL
1501: DPGKEKESIP SNLVSGNEQP DSNTAPAKKP KKKKRKLANN FDSVNNMEEK MPSTNVLSQG NKSGLIEEKP SIPSDQ
Arabidopsis Description
NIHDExH-box ATP-dependent RNA helicase DExH2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDQ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.