Factsheet for Zm00001d012661_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01523	Sorghum	nucleus	84.92	92.38
Os01t0767700-01	Rice	nucleus	76.38	81.19
TraesCS3B01G337600.3	Wheat	nucleus	72.31	78.66
TraesCS3A01G298900.1	Wheat	nucleus	70.46	77.96
TraesCS3D01G302800.2	Wheat	plastid	73.77	75.27
HORVU3Hr1G074660.7	Barley	plastid	72.92	74.41
GSMUA_Achr5P02110_001	Banana	mitochondrion	58.23	67.23
VIT_12s0028g01050.t01	Wine grape	nucleus	56.46	59.63
Solyc07g044930.2.1	Tomato	nucleus	54.46	59.05
KRH73592	Soybean	nucleus	51.15	57.23
KRH14525	Soybean	nucleus	50.85	56.79
CDY10756	Canola	nucleus	45.46	54.27
AT2G30800.1	Thale cress	nucleus	50.62	50.65
Bra021665.1-P	Field mustard	nucleus	50.85	50.65
CDX97797	Canola	nucleus	49.77	50.12
CDY29644	Canola	nucleus	50.23	49.96
Bra018293.1-P	Field mustard	plasma membrane, vacuole	49.31	48.56
CDY10215	Canola	nucleus	46.69	47.27
Zm00001d045376_P001	Maize	cytosol	11.31	44.55
AT1G06670.1	Thale cress	nucleus	46.92	38.71
Zm00001d019056_P001	Maize	nucleus	5.31	34.5
Zm00001d032735_P001	Maize	plastid	26.38	33.17
Zm00001d028923_P002	Maize	nucleus	16.08	28.99
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	24.77	26.86
Zm00001d047601_P006	Maize	nucleus	15.92	26.78
Zm00001d045147_P015	Maize	nucleus	14.46	26.63
Zm00001d049980_P001	Maize	plasma membrane	14.15	26.36
Zm00001d011963_P002	Maize	plasma membrane	14.46	26.07
Zm00001d040082_P003	Maize	plastid	26.46	24.45
Zm00001d003655_P006	Maize	nucleus, plastid	23.77	21.7
Zm00001d015893_P001	Maize	nucleus, plasma membrane	17.46	18.37
Zm00001d039380_P001	Maize	nucleus	13.31	18.27
Zm00001d031581_P002	Maize	nucleus	17.0	16.69
Zm00001d006459_P003	Maize	plastid	16.85	16.27
Zm00001d017967_P003	Maize	nucleus	14.85	15.09
Zm00001d022176_P002	Maize	nucleus	16.15	11.99

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.1370.50	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6GAN5	ProteinID:AQL00176.1
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001374
InterPro:IPR001650	InterPro:IPR002110	InterPro:IPR014001	InterPro:IPR020683	InterPro:IPR036770	InterPro:IPR036867
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF01424	PFAM:PF04408	PFAM:PF07717
PFscan:PS50088	PFscan:PS50297	PFscan:PS51061	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF100	InterPro:R3H_DEXH_helicase	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF48403	SUPFAM:SSF52540	SUPFAM:SSF82708	UniParc:UPI000845328F
EnsemblPlantsGene:Zm00001d012661	EnsemblPlants:Zm00001d012661_P002	EnsemblPlants:Zm00001d012661_T002	SEG:seg	:	:

Description

DExH-box ATP-dependent RNA helicase DExH6

Coordinates

chr8:-:178170786..178201113

Molecular Weight (calculated)

144160.0 Da

IEP (calculated)

7.908

GRAVY (calculated)

-0.356

Length

1300 amino acids

Sequence
(BLAST)

0001: MVHLSGVPVR PNPLRYPLAV STSSRFSFGA PEQRTIKRAT AAQARHRRPP VQPNRARRIE GASRPPSVLL DDDNEHEELM GRKGRKGKGA AAGGSAGMKE
0101: ATLVRVSKAL EDFRASNAEV YTFEPDISKQ ERAAIHEMCR KMGMISKSSG NGERRRLSVY KRKQKRGPEL EQGPSYLGFS EEARHVLQDL FMHYPPGDAD
0201: LSGDVDQSSS DKAANIKWRT DNAFCRPAMS KLDITKKVEM LASKINGSEQ LRKVMEDRTK LPISSFKDVI TSTLENHQVV LISGQTGCGK TTQVPQYILD
0301: HMWGKGESCK IICTQPRRIS AISVAERISA ERGEAVGDTV GYKIRLESKG GKNSSVLFCT NGVLLRLLIG RGTNASKARN QKRSLDDAVL GITHIIVDEI
0401: HERDRFSDFM LTILRDLLPL YPHLRMVLMS ATIDAERFSQ YFNGCSVIQV PGFTYPVSKL SQIEYIKRSE IIFGSYNFFP PQVKTFYLED VLSILQSAGD
0501: NHLTSHKTEG SVLTHDFKSS MDDSINLALV NDEFDPLLEL ISAEQNTEVY NYQHSETGIT PLMVFAMKGQ LGDVCMLLSF GVDCSAQDHD GKSALDWAQQ
0601: ENQQEVCEVI KKHMECSSEK STEDNELLNK YLASINPEHI DTLLIERLLR KICVDSNEGA ILVFLPGWED ISQTRERLFA SPFFQDSSRF LVLSLHSMIP
0701: SSEQKKVFKR PPVGVRKIIL STNIAETAVT IDDVVFVIDS GRMKEKSYDP YNNVSTLHAS WVSKASARQR EGRAGRCQPG TCYHLYSRFR ASSLPDYQIP
0801: EIKRMPIEEL CLQVKLLDSN CRIADFLKKT LDPPIPETVR NAIAVLQDLG ALTQDEQLTE LGEKLGSLPV HPSTTKMLLF AILMNCLDPA LTLACAADYR
0901: DPFVLPVAPD ERKRAAAAKV ELASLYGGFS DQLAVVAAFD FWRHAKDRGQ DSQFCAKYFV SSNIMNMLSS MRKQLQNELS QRGFVPADAS ACSLNSKDPG
1001: IMRAVLMAGA YPMVGKMLPP RKNARKSVLE TASGAKVRLH PHSCNFNLSF SKSSGNPLLI YDEITRGDGG MYIKNSSVVG SYPLLLIAAE MVVAPPDDDS
1101: DEDEEDSSED EAEESTLVQH KEEIMSSPDS IVSVVVDRWL RFDATALDVA QIYCLRERLA SAILFKVKHP QDVLPPALGA SMYAITCILS FDGLPSMVPP
1201: NDLSANRGSG QDLAEASKFS QGRRAGYIPP SGFLMSLLAD RTHNAPSFQN SSNHPGGGSA HTRPSRAPVG RFDRSRRPFR NSGPGTSAPR SFKRQRDAPR

Best Arabidopsis Sequence Match ( AT2G30800.1 )
(BLAST)

0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK

Arabidopsis Description

HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.