Factsheet for Zm00001d011963_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22666	Sorghum	nucleus	91.26	93.33
Os06t0192500-02	Rice	mitochondrion	52.01	91.91
TraesCS7A01G156700.1	Wheat	plastid	87.52	88.5
TraesCS7D01G157100.1	Wheat	plastid	87.38	88.36
TraesCS7B01G060800.1	Wheat	plastid	87.38	88.36
HORVU7Hr1G032080.3	Barley	plastid	87.38	76.92
KRH70930	Soybean	nucleus	69.35	70.92
KRH75071	Soybean	nucleus	69.21	70.78
VIT_01s0137g00640.t01	Wine grape	nucleus	69.21	68.73
PGSC0003DMT400009842	Potato	mitochondrion	35.09	67.11
Solyc09g008120.2.1	Tomato	nucleus	65.19	66.1
AT1G26370.1	Thale cress	plastid	63.25	63.6
Bra011023.1-P	Field mustard	nucleus	60.47	63.28
CDY36075	Canola	nucleus	59.08	63.2
CDX85017	Canola	cytosol, plastid	63.11	63.02
CDY16154	Canola	nucleus, plastid	63.11	62.93
CDY34567	Canola	nucleus	57.56	62.59
CDY02818	Canola	nucleus	57.56	62.5
CDY32702	Canola	nucleus	59.92	62.43
Bra024720.1-P	Field mustard	nucleus	62.69	61.41
GSMUA_Achr5P05110_001	Banana	nucleus	74.2	52.66
Zm00001d028923_P002	Maize	nucleus	41.05	41.05
Zm00001d049980_P001	Maize	plasma membrane	37.73	38.97
Zm00001d047601_P006	Maize	nucleus	41.19	38.42
Zm00001d045147_P015	Maize	nucleus	34.4	35.13
Zm00001d045376_P001	Maize	cytosol	13.04	28.48
Zm00001d039380_P001	Maize	nucleus	34.4	26.19
Zm00001d015893_P001	Maize	nucleus, plasma membrane	43.83	25.57
Zm00001d031581_P002	Maize	nucleus	43.41	23.64
Zm00001d019056_P001	Maize	nucleus	6.24	22.5
Zm00001d006459_P003	Maize	plastid	40.36	21.62
Zm00001d032735_P001	Maize	plastid	29.13	20.31
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	29.4	17.68
Zm00001d017967_P003	Maize	nucleus	30.51	17.2
Zm00001d003655_P006	Maize	nucleus, plastid	29.54	14.96
Zm00001d040082_P003	Maize	plastid	28.43	14.57
Zm00001d012661_P002	Maize	mitochondrion, plastid	26.07	14.46
Zm00001d022176_P002	Maize	nucleus	29.54	12.16

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	UniProt:A0A1D6G548	ProteinID:AQK98407.1	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0043484
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
UniParc:UPI0008442AF0	EnsemblPlantsGene:Zm00001d011963	EnsemblPlants:Zm00001d011963_P002	EnsemblPlants:Zm00001d011963_T002	SEG:seg	:

Description

ATP-dependent RNA helicase DHX8

Coordinates

chr8:+:165266721..165275070

Molecular Weight (calculated)

80565.5 Da

IEP (calculated)

8.590

GRAVY (calculated)

-0.174

Length

721 amino acids

Sequence
(BLAST)

001: MPSFSAGASS QKQQFARGRQ LIRQQRKSLP IASGLPAELL YVFDTFWDLS SGSRILLFVV GSVEKRLVEE VRNNDTLIIV GETGSGKTTQ LPQFLYDGGL
101: CQDGKVIGIT QPRRVAAVTV AKRVAEECND HIGKKVGYSI RFDDSTSNAT RIKYMTDGLL LREALLDPLL SKYSVIVVDE AHERTVHTDV LLGLLKKVQH
201: SRANTNKNGK TLLGHSQNVT IKECQGIRCA PLKLIIMSAS LDAKCFSDYF GGAKAVHIQG RQYPVDILYT YQPESDYMDA TLVTIFQIHL EEGPGDILAF
301: LTGQEEIESL ERLIHERARL FPPESSKICV TPIYSSLPSE QQMNAFKPAP AGTRKVVLAT NIAETSVTIP GIKYVIDPGM VKARAYNPVT GMESLIIIPV
401: SKAQALQRSG RAGREGPGKC FRLFQESEFD KLVDSTVPEI KRCNLSNVVL QLKALGIDDI IGFDFMEKPS RTAILKSLEQ LILLGALTDD YKLSDPVGHQ
501: MARLPLDPMY SKSLIVSSKF KCLEEMLIVV SMLSVESIFF SVREKLEEAR AARKRFESSE GDHITLVNVY RGAAECLEKS RNANAKEKTM EKALNRWCRE
601: NFINYRSLRH ARDVHRQIQG HVQQMGLSMS SCGDDMVLFR RCLTSAFFLN AAMRQPDGSY RALATGQSVQ IHPSSVLFRT KVDCVIFNEL VRTTQNYIKN
701: LTRIDPLWLA ELAPQYYATE E

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.