CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70930	Soybean	nucleus	96.74	96.74
VIT_01s0137g00640.t01	Wine grape	nucleus	75.6	73.42
KXG22666	Sorghum	nucleus	71.77	71.77
Os06t0192500-02	Rice	mitochondrion	41.13	71.08
TraesCS7A01G156700.1	Wheat	plastid	71.77	70.97
Solyc09g008120.2.1	Tomato	nucleus	71.35	70.75
PGSC0003DMT400009842	Potato	mitochondrion	37.73	70.56
TraesCS7D01G157100.1	Wheat	plastid	71.35	70.55
TraesCS7B01G060800.1	Wheat	plastid	71.06	70.27
Zm00001d011963_P002	Maize	plasma membrane	70.78	69.21
AT1G26370.1	Thale cress	plastid	70.35	69.18
CDX85017	Canola	cytosol, plastid	70.5	68.84
Bra011023.1-P	Field mustard	nucleus	66.81	68.36
CDY16154	Canola	nucleus, plastid	70.07	68.33
CDY36075	Canola	nucleus	65.11	68.1
CDY02818	Canola	nucleus	63.97	67.92
CDY32702	Canola	nucleus	66.24	67.49
CDY34567	Canola	nucleus	63.4	67.42
Bra024720.1-P	Field mustard	nucleus	69.65	66.71
HORVU7Hr1G032080.3	Barley	plastid	71.49	61.54
GSMUA_Achr5P05110_001	Banana	nucleus	72.62	50.39
KRH68290	Soybean	nucleus	41.42	40.56
KRG96553	Soybean	nucleus	41.28	40.36
KRH69191	Soybean	nucleus	41.28	40.3
KRH31768	Soybean	cytosol, nucleus	32.62	39.86
KRH21325	Soybean	nucleus	37.3	39.49
KRH58751	Soybean	nucleus	37.02	37.45
KRH12910	Soybean	cytosol, nucleus	38.72	36.64
KRH69386	Soybean	cytosol	12.77	34.22
KRH40933	Soybean	cytosol	27.8	32.18
KRG97372	Soybean	nucleus	44.11	32.16
KRH54662	Soybean	nucleus	45.25	30.5
KRH74752	Soybean	nucleus	44.11	30.14
KRH05918	Soybean	nucleus	45.53	26.82
KRH17401	Soybean	nucleus	45.53	26.68
KRH72171	Soybean	nucleus	29.93	23.44
KRH23170	Soybean	nucleus	39.72	22.03
KRH10165	Soybean	nucleus	39.57	21.93
KRH32860	Soybean	mitochondrion, nucleus, plastid	29.79	20.39
KRH38164	Soybean	nucleus	31.63	20.24
KRG90929	Soybean	plastid	30.5	18.88
KRH41772	Soybean	plastid	30.78	18.44
KRH60477	Soybean	plastid	30.78	18.39
KRH44757	Soybean	plastid	29.65	18.0
KRH13104	Soybean	mitochondrion	10.5	17.29
KRH76262	Soybean	nucleus	32.34	17.26
KRH65271	Soybean	nucleus	32.2	17.17
KRH73592	Soybean	nucleus	26.95	16.35
KRH14525	Soybean	nucleus	26.81	16.24
KRH01863	Soybean	nucleus	31.63	15.51
KRG97543	Soybean	nucleus, plastid	32.91	13.42
KRH31333	Soybean	nucleus, plastid	32.48	13.19

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100782527	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	EMBL:ACUP02000112	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	EnsemblPlantsGene:GLYMA_01G060700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1J614	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KRH75071
ProteinID:KRH75071	ProteinID:KRH75071.1	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI000233750A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:8369863..8389521

Molecular Weight (calculated)

79311.1 Da

IEP (calculated)

8.345

GRAVY (calculated)

-0.197

Length

705 amino acids

Sequence
(BLAST)

001: MPSVQRGSFS NRQTQFSERR QKIIQQRKSL PIAPVEKRLV EEVRKHDVLI IVGETGSGKT TQIPQFLFDA GFCCDGRVIG ITQPRRVAAV TVAKRVAEEC
101: GVELGQKVGY SVRFDDATSG LTRIKYMTDG LLLREALLDP YLSKYSVIIV DEAHERTVHT DVLMGLLKSV QLARSSSVSG GQGLNFGNKN MNKLFEKEND
201: QSGIFLKKPR HEKYAPLKLI IMSASLDARA FSEYFGGAKA VHIQGRQFPV DIFYTRDAET DYLDASLITI FQIHLEEGPG DILVFLTGQE EIESVERLIS
301: EKLPQLPQES QKLLVVPIFA ALPSEQQMRV FAPSPSGFRK VILATNIAET SVTIPGIKYV IDPGFVKARS YDPGKGMESL IIIPTSKSQA LQRSGRAGRE
401: GPGKCFRLYP EREFEKLEDS TMPEIKRCNL SNVILQLKAL GVDDILGFDF IDKPSRAAII KSLEQLFLLG ALTDECQLSD PVGHQMARLP LDPLYSKALI
501: LASQFNCLEE MLITVALLSV ESIFYSPRDK LEEARTATKC FSSPVGDHIT LINVYRASND FLEKRSMEMN MAKTEKVYRK WCKENFINSR SLRHARDIHR
601: QIQGHVEQMG LNLSSCGDDM LQFCRCLAAS FFINAAVKQP DGTYRALASG QMVQIHPSSV LFRQKPECVI FNELVQTNHK YVRNLTRVDY LWLTELAPQY
701: YAMHN

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.