Factsheet for Bra024720.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16154	Canola	nucleus, plastid	96.47	98.2
Bra011023.1-P	Field mustard	nucleus	81.11	86.65
AT1G26370.1	Thale cress	plastid	81.39	83.54
KRH70930	Soybean	nucleus	67.26	70.21
KRH75071	Soybean	nucleus	66.71	69.65
VIT_01s0137g00640.t01	Wine grape	nucleus	66.17	67.08
PGSC0003DMT400009842	Potato	mitochondrion	33.83	66.05
Solyc09g008120.2.1	Tomato	nucleus	62.77	64.98
KXG22666	Sorghum	nucleus	61.96	64.68
Os06t0192500-02	Rice	mitochondrion	35.6	64.22
TraesCS7D01G157100.1	Wheat	plastid	62.09	64.1
TraesCS7A01G156700.1	Wheat	plastid	62.09	64.1
TraesCS7B01G060800.1	Wheat	plastid	61.82	63.81
Zm00001d011963_P002	Maize	plasma membrane	61.41	62.69
HORVU7Hr1G032080.3	Barley	plastid	61.82	55.56
GSMUA_Achr5P05110_001	Banana	nucleus	63.86	46.26
Bra003744.1-P	Field mustard	nucleus	38.99	42.84
Bra001237.1-P	Field mustard	cytosol	24.32	41.44
Bra007671.1-P	Field mustard	nucleus	39.95	40.95
Bra000445.1-P	Field mustard	cytosol	40.22	40.94
Bra040328.1-P	Field mustard	cytosol, mitochondrion	11.68	40.19
Bra001238.1-P	Field mustard	cytosol, mitochondrion	14.27	39.77
Bra013313.1-P	Field mustard	nucleus	37.23	39.31
Bra010915.1-P	Field mustard	nucleus	34.38	35.89
Bra038498.1-P	Field mustard	nucleus	40.08	32.74
Bra010168.1-P	Field mustard	nucleus	41.71	29.41
Bra025211.1-P	Field mustard	nucleus	41.3	25.96
Bra023387.1-P	Field mustard	nucleus	37.5	22.12
Bra023043.1-P	Field mustard	nucleus	28.8	21.31
Bra040091.1-P	Field mustard	nucleus	21.06	19.6
Bra018747.1-P	Field mustard	plastid	29.21	18.22
Bra024903.1-P	Field mustard	nucleus	27.72	17.97
Bra032998.1-P	Field mustard	nucleus	30.16	17.95
Bra009414.1-P	Field mustard	mitochondrion	27.31	17.4
Bra021665.1-P	Field mustard	nucleus	25.95	14.64
Bra018293.1-P	Field mustard	plasma membrane, vacuole	25.95	14.47
Bra027890.1-P	Field mustard	nucleus	23.64	13.08
Bra009038.1-P	Field mustard	plastid	30.71	12.79
Bra006057.1-P	Field mustard	plastid	30.43	12.76

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra024720	EnsemblPlants:Bra024720.1	EnsemblPlants:Bra024720.1-P
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M4E7G5	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00025427A3	SEG:seg

Description

AT1G26370 (E=6e-250) | RNA helicase, putative

Coordinates

chrA09:-:23345657..23348861

Molecular Weight (calculated)

83127.4 Da

IEP (calculated)

8.393

GRAVY (calculated)

-0.335

Length

736 amino acids

Sequence
(BLAST)

001: MAQGELKSSV LPNPKPPIAS RFSMRQKIAE HRKSLPIASV EKRLIEEVQK NDILIIVGET GSGKTTQLPQ FLFSGGFCRE GKMVGITQPR RIAAVTIAKR
101: VAEESDVELG QRVGYSIRFD DCTSSSTRLK YMTDGFLLRE ALLDPLLSRY SVIVVDEAHE RTVHTDVLLA LLKEVQRARS KHEGVQTKAG DEIGVKRNGG
201: VLRGCQGRKV SPLKLIIMSA SLDARVFSEY FGGAKAVHVE GRQFPVDIFY TVHPETDYVD AALVTIFQIH VEEKPGDILV FLTGQDEIES VERLVKERLE
301: HLPEDKRKLL PLAIFSALPS EQQMQVFAPA PTGFRKVILA TNIAETSITI PGIRYVIDPG FVKARTYDPS KGMETLDVVP ASKAQSLQRS GRAGREGPGK
401: CFRLYPEREF EKLDGSTKPE IKRCNLSNVI LQLKALGIDD IVGFDFIDKP SRGAIVKALT ELRLLGALTD DCQLEKPAGE QMSRLPLDPV YSRALILANK
501: QFNCLEEMLI TVAMLSVESI FYDPREKREE ARTSRNHFAS IEGDHLTYLS VYRESNEFLE KRKTESSEAK IDKIMKKWCK DNFVNNRSLK HARDTYRQIR
601: GHVEQMGFNV SSCGNDMLEY RRCLAASFFL KAAQRQMDGT YRALESGEIV HIHPTSVLFR SKPECVIFNE LMQTSKKYIK NLTRIDHLWL AEFAPHHYKT
701: DDEMKDLTQD DCFYSVRDGT LRPLETEANV KGKLFV

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.