Factsheet for Bra013313.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99466	Canola	nucleus	98.57	98.14
CDX78859	Canola	nucleus	97.99	97.85
AT4G18465.1	Thale cress	nucleus	94.12	94.39
PGSC0003DMT400046188	Potato	nucleus	76.76	77.54
VIT_10s0003g00810.t01	Wine grape	nucleus	76.9	77.23
Solyc09g097820.2.1	Tomato	nucleus	76.18	76.62
OQU86123	Sorghum	nucleus	75.9	75.57
KRH21325	Soybean	nucleus	72.17	75.53
Os01t0212100-01	Rice	nucleus	75.32	75.0
TraesCS3D01G148100.1	Wheat	nucleus	74.46	74.04
TraesCS3A01G131800.1	Wheat	nucleus	74.17	73.75
TraesCS3B01G165500.1	Wheat	nucleus	74.17	73.75
GSMUA_Achr11P...	Banana	nucleus	38.88	71.5
HORVU3Hr1G028550.17	Barley	cytosol	70.16	70.16
Zm00001d039380_P001	Maize	nucleus	64.85	47.73
Bra040328.1-P	Field mustard	cytosol, mitochondrion	14.06	45.79
Bra001237.1-P	Field mustard	cytosol	27.4	44.21
Bra003744.1-P	Field mustard	nucleus	42.18	43.88
Bra001238.1-P	Field mustard	cytosol, mitochondrion	16.21	42.8
Bra007671.1-P	Field mustard	nucleus	43.04	41.78
Bra000445.1-P	Field mustard	cytosol	43.19	41.63
Bra011023.1-P	Field mustard	nucleus	38.88	39.33
Bra024720.1-P	Field mustard	nucleus	39.31	37.23
Bra010915.1-P	Field mustard	nucleus	35.87	35.46
Bra038498.1-P	Field mustard	nucleus	44.33	34.3
Bra010168.1-P	Field mustard	nucleus	44.05	29.41
Bra025211.1-P	Field mustard	nucleus	44.05	26.22
Bra023387.1-P	Field mustard	nucleus	40.46	22.6
Bra023043.1-P	Field mustard	nucleus	31.28	21.91
Bra040091.1-P	Field mustard	nucleus	24.82	21.87
Bra024903.1-P	Field mustard	nucleus	30.42	18.68
Bra018747.1-P	Field mustard	plastid	30.42	17.97
Bra009414.1-P	Field mustard	mitochondrion	28.98	17.49
Bra032998.1-P	Field mustard	nucleus	30.27	17.06
Bra021665.1-P	Field mustard	nucleus	27.98	14.94
Bra018293.1-P	Field mustard	plasma membrane, vacuole	27.83	14.7
Bra006057.1-P	Field mustard	plastid	31.56	12.54
Bra009038.1-P	Field mustard	plastid	31.42	12.39
Bra027890.1-P	Field mustard	nucleus	23.53	12.33

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra013313	EnsemblPlants:Bra013313.1	EnsemblPlants:Bra013313.1-P
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0009506	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M4DA03	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF136
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0002546091	SEG:seg

Description

AT4G18465 (E=0.0) | RNA helicase, putative

Coordinates

chrA01:+:4921672..4926158

Molecular Weight (calculated)

77819.6 Da

IEP (calculated)

8.300

GRAVY (calculated)

-0.203

Length

697 amino acids

Sequence
(BLAST)

001: MAFWKPGTEK PSFVEDEEGG IVLTSNNLSS SSSSSFGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQSV SARVAEEMGV NLGDEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMVD EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKAM FNFFNTSKKR QAPEGSTQGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQDDIET AIKLLAEEAH
301: SNQKNSSGLL TLPLYSGLSR AEQELIFTPT PRGKRKVILS TNIAETSLTL EARLLGVVYV IDSGFSKQKF YNPISDIESL VVAPISKASA RQRSGRAGRV
401: RPGKCYRLYT EDYFLKEMPG EGIPEMQRSN LVSTVIQLKA LGIDNILGFD WPSPPSPQAM IRALEVLYSL QILDDDAKLT SPTGFQVAEL PLDPMISKMI
501: LASNELGCSD EIITIAAVLS IQSVWVIARG VQKEQDEAKL RFAAAEGDHI TFLNVYKGFL ESKKSSQWCY KNFLNYQSMK KVVEIRDQLK RIARRLGITL
601: KSCDGDIDAV RKAVTAGFFA NACRLEPHSN GVFKTIRGSE EVYIHPSSVL FRVNPKWVVY QSIVSTERQY MRNVVTINPS WLTEAAPHFY QNRQNNM

Best Arabidopsis Sequence Match ( AT4G18465.1 )
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.