Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0212100-01 | Rice | nucleus | 93.0 | 93.0 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 92.29 | 92.15 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 92.0 | 91.87 |
| TraesCS3A01G131800.1 | Wheat | nucleus | 91.71 | 91.58 |
| HORVU3Hr1G028550.17 | Barley | cytosol | 86.71 | 87.09 |
| GSMUA_Achr11P... | Banana | nucleus | 42.57 | 78.63 |
| VIT_10s0003g00810.t01 | Wine grape | nucleus | 76.86 | 77.52 |
| Bra013313.1-P | Field mustard | nucleus | 75.57 | 75.9 |
| AT4G18465.1 | Thale cress | nucleus | 75.14 | 75.68 |
| CDX78859 | Canola | nucleus | 75.43 | 75.64 |
| CDX99466 | Canola | nucleus | 75.57 | 75.57 |
| PGSC0003DMT400046188 | Potato | nucleus | 74.29 | 75.36 |
| Solyc09g097820.2.1 | Tomato | nucleus | 74.14 | 74.89 |
| KRH21325 | Soybean | nucleus | 70.57 | 74.17 |
| Zm00001d039380_P001 | Maize | nucleus | 83.43 | 61.67 |
| KXG39505 | Sorghum | cytosol | 43.57 | 42.24 |
| KXG22666 | Sorghum | nucleus | 41.0 | 40.71 |
| EER87951 | Sorghum | nucleus, plastid | 37.71 | 37.45 |
| KXG30390 | Sorghum | nucleus | 45.0 | 30.11 |
| EES02741 | Sorghum | nucleus | 44.71 | 29.92 |
| OQU77934 | Sorghum | nucleus | 45.14 | 29.64 |
| EES15324 | Sorghum | nucleus | 44.0 | 28.76 |
| EER95349 | Sorghum | nucleus | 47.29 | 26.65 |
| KXG36287 | Sorghum | nucleus | 41.29 | 22.49 |
| KXG38358 | Sorghum | nucleus | 31.57 | 21.33 |
| KXG37551 | Sorghum | nucleus, vacuole | 30.86 | 18.75 |
| KXG32067 | Sorghum | mitochondrion | 32.86 | 18.53 |
| KXG30805 | Sorghum | nucleus | 32.29 | 17.71 |
| EES01523 | Sorghum | nucleus | 27.43 | 16.07 |
| KXG26332 | Sorghum | nucleus, plastid | 29.57 | 14.52 |
| OQU90279 | Sorghum | nucleus | 31.43 | 14.5 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1W0VVG6 | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0009506 |
| GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| EnsemblPlants:OQU86123 | ProteinID:OQU86123 | ProteinID:OQU86123.1 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 |
| PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF136 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | EnsemblPlantsGene:SORBI_3003G021600 | SUPFAM:SSF52540 | UniParc:UPI0009DC9215 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:1845896..1858015
Molecular Weight (calculated)
78297.5 Da
IEP (calculated)
7.351
GRAVY (calculated)
-0.142
Length
700 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRFWKPGSE KPSTLLVDDE EGGVVFLPSS TSSASSSGFG YASLERQRQR LPVYKYRKAI LYLVERHATT IVVGETGSGK STQIPQYLKE AGWADGGRLI
101: GCTQPRRLAV QTVASRVAEE VGVKLGEEVG YTIRFEDQTN PGMTMIKFLT DGVLIREMME DPLLTKYSVI MVDEAHERSI STDMLLGLLK KIQRRRPELR
201: LIISSATIEA RSMSTFFNIR RKNSLLGSSD DLPSPEPAIL SVEGKGYTVE IHYVEEPVSD YLQAAVNTVL LIHEKEPPGD ILVFLTGQDD IEGAVKLLNE
301: EIQHLGRHYL DLLILPLYSG LPRGDQDLIF APTSKGKRKV VLSTNIAETS LTLEGVVYVV DSGFSKQKCY NPISDIESLV VAPISKASAR QRAGRAGRVR
401: PGKCFRLYTE EYYLNEMQSE GIPEMQRSNL VSCIIQLKAL GIDNILGFDW PASPSPEAMI RALEVLFSLG ILDEDAKLTV PTGFQVAEIP LDPMISKMIL
501: SANDFGCSDE ILTIASFLSV QSVWVSVRGV KKEFDEAKLR FAAAEGDHVT FLNIYKGFHQ SGKSSQWCYK NFLNYQALKK VVDIRGQLLR IVKSFGIQLK
601: SCDRDMQAVR KAIIAGSFTN ACHLEEYSQN GMYKTIRTSQ EVYIHPSSVL FRVNPKWVVY QSLVSTDKHY MRNVIAIEPS WLTETAPHFY QFRTLNPALH
101: GCTQPRRLAV QTVASRVAEE VGVKLGEEVG YTIRFEDQTN PGMTMIKFLT DGVLIREMME DPLLTKYSVI MVDEAHERSI STDMLLGLLK KIQRRRPELR
201: LIISSATIEA RSMSTFFNIR RKNSLLGSSD DLPSPEPAIL SVEGKGYTVE IHYVEEPVSD YLQAAVNTVL LIHEKEPPGD ILVFLTGQDD IEGAVKLLNE
301: EIQHLGRHYL DLLILPLYSG LPRGDQDLIF APTSKGKRKV VLSTNIAETS LTLEGVVYVV DSGFSKQKCY NPISDIESLV VAPISKASAR QRAGRAGRVR
401: PGKCFRLYTE EYYLNEMQSE GIPEMQRSNL VSCIIQLKAL GIDNILGFDW PASPSPEAMI RALEVLFSLG ILDEDAKLTV PTGFQVAEIP LDPMISKMIL
501: SANDFGCSDE ILTIASFLSV QSVWVSVRGV KKEFDEAKLR FAAAEGDHVT FLNIYKGFHQ SGKSSQWCYK NFLNYQALKK VVDIRGQLLR IVKSFGIQLK
601: SCDRDMQAVR KAIIAGSFTN ACHLEEYSQN GMYKTIRTSQ EVYIHPSSVL FRVNPKWVVY QSLVSTDKHY MRNVIAIEPS WLTETAPHFY QFRTLNPALH
001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.