CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0748800-01	Rice	mitochondrion	93.14	93.3
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	96.79	92.99
TraesCS5D01G397600.1	Wheat	nucleus	91.84	92.0
TraesCS5B01G392800.1	Wheat	nucleus	91.84	92.0
TraesCS5A01G387700.2	Wheat	golgi, nucleus	91.58	91.34
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	90.8	90.96
GSMUA_Achr4P07530_001	Banana	mitochondrion	81.25	80.34
KRH44757	Soybean	plastid	77.17	76.57
AT5G04895.1	Thale cress	mitochondrion	76.65	76.06
Solyc01g006710.2.1	Tomato	mitochondrion	76.48	75.69
PGSC0003DMT400055091	Potato	mitochondrion	76.39	75.6
Bra009414.1-P	Field mustard	mitochondrion	75.61	75.41
CDX98799	Canola	mitochondrion	75.52	75.39
CDX70187	Canola	mitochondrion	75.61	75.35
KRH13104	Soybean	mitochondrion	24.13	64.95
KXG32067	Sorghum	mitochondrion	60.85	56.49
KXG38358	Sorghum	nucleus	39.24	43.63
KXG39505	Sorghum	cytosol	20.57	32.83
OQU86123	Sorghum	nucleus	18.75	30.86
KXG22666	Sorghum	nucleus	18.23	29.79
EER87951	Sorghum	nucleus, plastid	18.14	29.65
EES01523	Sorghum	nucleus	27.17	26.19
KXG26332	Sorghum	nucleus, plastid	30.73	24.82
EES15324	Sorghum	nucleus	22.14	23.81
OQU77934	Sorghum	nucleus	21.53	23.26
EES02741	Sorghum	nucleus	21.09	23.23
KXG30390	Sorghum	nucleus	20.83	22.94
EER95349	Sorghum	nucleus	23.26	21.58
KXG36287	Sorghum	nucleus	21.01	18.83
KXG30805	Sorghum	nucleus	19.62	17.71
OQU90279	Sorghum	nucleus	21.01	15.95
PGSC0003DMT400041647	Potato	cytosol	2.17	6.81

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6QI08	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720	EnsemblPlants:KXG37551	ProteinID:KXG37551	ProteinID:KXG37551.1
InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF103	SMART:SM00487	SMART:SM00490
SMART:SM00847	EnsemblPlantsGene:SORBI_3001G089600	SUPFAM:SSF52540	SUPFAM:SSF54768	UniParc:UPI00081ABBE6	InterPro:dsRBD_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:6947086..6953559

Molecular Weight (calculated)

130077.0 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.385

Length

1152 amino acids

Sequence
(BLAST)

0001: MRRGLRRGLG ILLVPLPHVP SRPQPTSLAA LLLLPRRLDG FSRHSFCSFP GGGRAVEQFS DDEYDHEYED LRPSSSVANI DEWRWKLSML QRNAEEQEII
0101: SRDRRDRRDY DQIANLAKRM GLYSEMYGRV VVASKVPLPN YRPDLDDKRP QREVVIPLSL QRRVEGLVQE HLDRALLPLD KCGGNTKSGS EMAENANLDE
0201: QHDSLLDRSV MEKILQRKSI RMRNFQRSWQ ESPEGAKMLE FRRSLPAYKE KERLLAAIAR NQVIVISGET GCGKTTQLPQ FVLESEIESG RGAFCNIICT
0301: QPRRISAMAV AERVSTERGE NLGESVGYKV RLEGIKGKDT HLLFCTSGIL LRRLLSDRNL NGVTHVFVDE IHERGMNEDF LLIVLKELLS RRRDLRLILM
0401: SATLNAELFS SYFGGAPTIH IPGFTHPVRA HFLEDILERS GYKLTSSNQL DDYGQDKVWK TQRQLLPRKR KNQITTLVEE ALKNSSFETY GSRTRDSLVN
0501: WNPDCIGFNL IEAVLCHICR KERPGAVLVF MTGWDDITCL KDQLKAHPLL GDPNRVLLLA CHGSMATSEQ RLIFEKPPPN VRKVVLATNM AEASITINDI
0601: VFVVDCGKAK ETTYDALNNT PCLLPSWISK ASARQRRGRA GRVQPGECYH LYPRCVYDAF ADYQLPELLR TPLNSLCLQI KSLQVGSIGE FLSAALQPPE
0701: PLAVENAVEF LKMIGALDGN ENLTDLGRYL SMLPVDPKLG KMLIMGAVFR CIDPILTVVA GLSVRDPFLL PQEKKDLAGT AKSRFSAKDY SDHMALVRAY
0801: EGWKDAEREG SAYEYCWRNF LSSQTLQAIH SLRKQFSYIL KDSGLIDSDG NTNNSLSHNQ SLVRGIICSG LFPGIASVVH RENSMSFKTM DDGQVLLYVN
0901: SVNAKYQTIP YPWLVFGEKV KVNAVFIRDS TGVSDSIVIL FGGAVTKGGM AGHLKMLDGY IDFFMDPSLS ECYLQLKEEL DKLIQKKLED PNFDIHKEGK
1001: HILFAVQELA AGDLCEGRFV FGRETSRARL RNPEDDSKSN IIKDGMNPKS LLQTLLMRAG HTPPKYKTKH LKTNEFRAMV EFKGMQFVGK PKRNKQLAER
1101: DAAIEALGWL TQTSGVKPQD ENDDDSPLDL TDGMLKLLTR PRRHSKNNSR KR

Best Arabidopsis Sequence Match ( AT5G04895.1 )
(BLAST)

0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K

Arabidopsis Description

ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.