Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39917 | Canola | nucleus | 99.02 | 93.21 |
| AT1G58060.1 | Thale cress | nucleus | 86.62 | 78.96 |
| Os04t0432200-00 | Rice | extracellular | 3.23 | 58.9 |
| VIT_12s0035g00800.t01 | Wine grape | nucleus | 58.87 | 57.2 |
| Solyc01g103690.2.1 | Tomato | nucleus | 59.7 | 55.22 |
| KRH01863 | Soybean | nucleus | 58.35 | 53.96 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 51.65 | 48.28 |
| KXG26332 | Sorghum | nucleus, plastid | 50.45 | 47.05 |
| TraesCS2A01G304100.1 | Wheat | nucleus, plastid | 50.45 | 46.96 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 50.23 | 46.91 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 50.08 | 46.64 |
| TraesCS2D01G302700.1 | Wheat | plastid | 49.92 | 46.47 |
| Bra023043.1-P | Field mustard | nucleus | 23.46 | 31.36 |
| Bra024903.1-P | Field mustard | nucleus | 22.41 | 26.26 |
| Bra001237.1-P | Field mustard | cytosol | 8.27 | 25.46 |
| Bra011023.1-P | Field mustard | nucleus | 13.08 | 25.25 |
| Bra003744.1-P | Field mustard | nucleus | 12.71 | 25.22 |
| Bra009414.1-P | Field mustard | mitochondrion | 21.43 | 24.68 |
| Bra018747.1-P | Field mustard | plastid | 21.2 | 23.9 |
| Bra010915.1-P | Field mustard | nucleus | 12.63 | 23.83 |
| Bra024720.1-P | Field mustard | nucleus | 13.08 | 23.64 |
| Bra013313.1-P | Field mustard | nucleus | 12.33 | 23.53 |
| Bra007671.1-P | Field mustard | nucleus | 12.63 | 23.4 |
| Bra000445.1-P | Field mustard | cytosol | 12.56 | 23.1 |
| Bra038498.1-P | Field mustard | nucleus | 14.74 | 21.75 |
| Bra001238.1-P | Field mustard | cytosol, mitochondrion | 4.21 | 21.21 |
| Bra010168.1-P | Field mustard | nucleus | 15.64 | 19.92 |
| Bra040328.1-P | Field mustard | cytosol, mitochondrion | 3.16 | 19.63 |
| Bra021665.1-P | Field mustard | nucleus | 18.05 | 18.39 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 18.05 | 18.18 |
| Bra025211.1-P | Field mustard | nucleus | 15.86 | 18.02 |
| Bra023387.1-P | Field mustard | nucleus | 15.04 | 16.03 |
| Bra032998.1-P | Field mustard | nucleus | 12.93 | 13.9 |
| Bra040091.1-P | Field mustard | nucleus | 7.59 | 12.77 |
| Bra006057.1-P | Field mustard | plastid | 14.81 | 11.23 |
| Bra009038.1-P | Field mustard | plastid | 14.66 | 11.04 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EnsemblPlantsGene:Bra027890 | EnsemblPlants:Bra027890.1 | EnsemblPlants:Bra027890.1-P | ncoils:Coil |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | UniProt:M4EGH6 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF190 | SMART:SM00487 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0002542137 | SEG:seg | : | : | : |
Description
AT1G58060 (E=8e-248) | helicase domain-containing protein
Coordinates
chrA09:+:9612207..9624206
Molecular Weight (calculated)
148843.0 Da
IEP (calculated)
5.799
GRAVY (calculated)
-0.453
Length
1330 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAPKKKPQKQ SNKAASSSSS SSSSKPKPSS GPKLQISAEN EDRLRRLLLN SGRTAPPAPA PIHSALSKNQ KAKKLNTVYE KLSCEGFVDD QIELALSSLR
0101: DGATFETALD WLCLNLPSHE LPVKFSTGAS RFPTGGGSVG VILTSREDWN EPSDSSVELK QEEPEVLVKV KGKQDEDALR SDQSSQADWI RQYMRRQEEE
0201: ELESWEDEVD GVGSSREASG PRAFDVIAKE YYSARSDAIK AKDKRDKKGQ EQAGLAIRKL KQEIAALGIS EATLESEFQR EYAFEDATEK EIASPMPDTV
0301: HEAVDADSIQ PLDEPVLDEN PVENCGSEEN QRKDLPSCSP GQEVVASDDN SEYLALDDMF SVDVPHYEAS PHELLELQKK EKMRELRSEE NLGKLEGIWK
0401: KGEAQKVPKA FLHQLCQRSG WDAPKFNKVT GEGRKISYTV SILRKASGRG KSRQAGGLVT LQLPHQDEVF ESIEDAQNRV AAFALHKLFS DLPVHFAITE
0501: PYASLVLIWK QDELFCTVQS TEEDRRANFV DRLLEADSLS LNDSSSSISD AVPMVDTYVE EKDDLGLARS SHRAKRDSYI EATCLSLQQR QENKKKTRKY
0601: KDMLKTRTAL PISEVKNDIL HHLKERDVLV VCGETGSGKT TQAISVAQRV ADERCESSPG SDDSLVGYQV RLESARSDKT RLLFCTTGIL LRKLAGDKTL
0701: NDVTHIIVDE VHERSLLGDF LLIILKSLIE KQSCDNTSQR LKVILMSATV DANLFSNYFA HCPVITAQGR THPVTTHFLE EIYESTRYLL APDSPAALRS
0801: DSSIKDKLGS VNDRRGKKNL VLAGWGDDYL LSEDCLNPFY VSGNYNLYSD QTQQNLKRLN EDAIDYELLE ELICHIDDTC NEGAILVFLP GVSEIHMLLD
0901: RLAASYRFRG PSADWLLPLH SSIASTEQKR VFLRPPEDVR KVIIATNIAE TSITIDDVVY VIDSGKHKEN RYNPQKVGAV EGDEELTPLG HHLAKLPVDV
1001: LIGKMLLYGG IFGCLSPILS IAAFLSYKSP FIYPKDEKQN VDRVKLALFS DNMDKSSELN NNDKQSDHLL MMVAYDKWVK ILNERGMKAA QRFCESKFLS
1101: SSVMRMIRDM RVQYGTLLAD IGLINLPKTG EFAGRKKENL DVWFSDQTQP FNMYSQQPEV VKAILCAGLY PNIAANDKGI TETAVNSLTK QGNQTKSYSA
1201: WYDGRREVYI HPSSINSNFK AFQYPFLVFL EKVETNKVYL RDTTIVSPFS ILLFGGSINV HHQSGSVTID GWLKIAAPAQ TAVLFKELRL TLHSILKDLI
1301: RKPEISGIVH NEVVKYMVHL LIEEGKPQHT
0101: DGATFETALD WLCLNLPSHE LPVKFSTGAS RFPTGGGSVG VILTSREDWN EPSDSSVELK QEEPEVLVKV KGKQDEDALR SDQSSQADWI RQYMRRQEEE
0201: ELESWEDEVD GVGSSREASG PRAFDVIAKE YYSARSDAIK AKDKRDKKGQ EQAGLAIRKL KQEIAALGIS EATLESEFQR EYAFEDATEK EIASPMPDTV
0301: HEAVDADSIQ PLDEPVLDEN PVENCGSEEN QRKDLPSCSP GQEVVASDDN SEYLALDDMF SVDVPHYEAS PHELLELQKK EKMRELRSEE NLGKLEGIWK
0401: KGEAQKVPKA FLHQLCQRSG WDAPKFNKVT GEGRKISYTV SILRKASGRG KSRQAGGLVT LQLPHQDEVF ESIEDAQNRV AAFALHKLFS DLPVHFAITE
0501: PYASLVLIWK QDELFCTVQS TEEDRRANFV DRLLEADSLS LNDSSSSISD AVPMVDTYVE EKDDLGLARS SHRAKRDSYI EATCLSLQQR QENKKKTRKY
0601: KDMLKTRTAL PISEVKNDIL HHLKERDVLV VCGETGSGKT TQAISVAQRV ADERCESSPG SDDSLVGYQV RLESARSDKT RLLFCTTGIL LRKLAGDKTL
0701: NDVTHIIVDE VHERSLLGDF LLIILKSLIE KQSCDNTSQR LKVILMSATV DANLFSNYFA HCPVITAQGR THPVTTHFLE EIYESTRYLL APDSPAALRS
0801: DSSIKDKLGS VNDRRGKKNL VLAGWGDDYL LSEDCLNPFY VSGNYNLYSD QTQQNLKRLN EDAIDYELLE ELICHIDDTC NEGAILVFLP GVSEIHMLLD
0901: RLAASYRFRG PSADWLLPLH SSIASTEQKR VFLRPPEDVR KVIIATNIAE TSITIDDVVY VIDSGKHKEN RYNPQKVGAV EGDEELTPLG HHLAKLPVDV
1001: LIGKMLLYGG IFGCLSPILS IAAFLSYKSP FIYPKDEKQN VDRVKLALFS DNMDKSSELN NNDKQSDHLL MMVAYDKWVK ILNERGMKAA QRFCESKFLS
1101: SSVMRMIRDM RVQYGTLLAD IGLINLPKTG EFAGRKKENL DVWFSDQTQP FNMYSQQPEV VKAILCAGLY PNIAANDKGI TETAVNSLTK QGNQTKSYSA
1201: WYDGRREVYI HPSSINSNFK AFQYPFLVFL EKVETNKVYL RDTTIVSPFS ILLFGGSINV HHQSGSVTID GWLKIAAPAQ TAVLFKELRL TLHSILKDLI
1301: RKPEISGIVH NEVVKYMVHL LIEEGKPQHT
0001: MAPKKKPQKQ SNKAASSSSS SKSNYQKPSS GPKLQISAEN EDRLRRLLLN SGRSGPSIPA PISNSLSKAQ KTKKLNNVYE KLSCEGFVDD QIELALSSLR
0101: DGATFEAALD WLCLNLPSHE LPVKFSTGAS RFPSTGGSVG VISTSRDDWN DSTDSSVRVE EEEPAVFVRV KGKQDEEDTL SSDKSSQADW IRQYMMRQEE
0201: EELECWEDEV DGIDPRNKVS GPRPFDVIAK EYYSARSDAI KAKEKRDKRG QEQAGLAIRK LKQEISDLGL SEAMLESEFQ REHAFESATE QESTCPISDN
0301: LHESVDADDV SVQMLDNLTL NTNPAESYES EEIQTKALPS SSSGQDFVAS DEDSEDVELG DTFFEEIPPS EISPHELLEL QKEEKMRELR SEKNLGKLDG
0401: IWKKGEAQKI PKAFLHQLCQ RSGWEAPKFN KETGEGRNFS YTVSILRKAS GRGKNRQAGG LVTLQLPPKD ENFESIEDAQ NKVAAFALHK LFSDLPVHFA
0501: ITEPYASLVL IWKQEELLCT TIQSTEEDRR ANFVDKLLEE DSFSLTTSSS SFENSLPLVD SYVKDKDDLG VVKSNNRAKR DSYIEAECLS LQRKQENKKR
0601: TQKYKDMLKT RTALPISEVK NGILQHLKEK DVLVVCGETG SGKTTQVPQF ILDDMIDSGH GGYCNIICTQ PRRIAAISVA QRVADERCES SPGLDDSLVG
0701: YQVRLESARS DKTRLLFCTT GILLRKLAGD RTLNDVTHII VDEVHERSLL GDFLLIILKS LIEKQSCDNT SRKLKVILMS ATVDADLFSR YFGHCPVITA
0801: QGRTHPVTTH FLEEIYESIN YLLAPDSPAA LRSDTSIKDK LGSVNDRRGK KNLVLAGWGD DYLLSEDCLN PFYVSSNYNS YSDQTQQNLK RLNEDRIDYE
0901: LLEELICHID DTCEEGAILI FLPGVAEIYM LLDMLAASYR FRGPAADWLL PLHSSIASSE QRKVFLRPPK GLRKVIAATN IAETSITIDD VVYVIDSGKH
1001: KENRYNPQKK LSSMVEDWIS QANARQRTGR AGRVKPGICF SLYTRYRFEK LMRPYQVPEM LRMPLVELCL QIKLLGLGHI KPFLSRALEP PSEGAMTSAI
1101: SLLHEVGAVE GDEELTPLGH HLAKLPVDVL IGKMLLYGGI FGCLSPILSI AAFLSYKSPF IYPKDEKQNV DRVKLALLSD NGVSSSDLNN NDRQSDHLLM
1201: MVAYDKWVKI LQERGMKAAQ RFCESKFLSS SVMRMIRDMR VQFGTLLADI GLINLPKTGE FSGRKKENLD VWFSDPTQPF NMYSQQPEVV KAILCAGLYP
1301: NIAANDKGIT ETTFNSLTKQ GNQTKSYSAW YDGRREVHIH PSSINSNFKA FQNPFLVFLE KVETNKVYLR DTTIVSPFSI LLFGGSINVH HQSGSVTIDG
1401: WLKVAAPAQT AVLFKELRLT LHSILKDLIR KPEKSGIVHN EVVKSMVHLL IEEGKPQHK
0101: DGATFEAALD WLCLNLPSHE LPVKFSTGAS RFPSTGGSVG VISTSRDDWN DSTDSSVRVE EEEPAVFVRV KGKQDEEDTL SSDKSSQADW IRQYMMRQEE
0201: EELECWEDEV DGIDPRNKVS GPRPFDVIAK EYYSARSDAI KAKEKRDKRG QEQAGLAIRK LKQEISDLGL SEAMLESEFQ REHAFESATE QESTCPISDN
0301: LHESVDADDV SVQMLDNLTL NTNPAESYES EEIQTKALPS SSSGQDFVAS DEDSEDVELG DTFFEEIPPS EISPHELLEL QKEEKMRELR SEKNLGKLDG
0401: IWKKGEAQKI PKAFLHQLCQ RSGWEAPKFN KETGEGRNFS YTVSILRKAS GRGKNRQAGG LVTLQLPPKD ENFESIEDAQ NKVAAFALHK LFSDLPVHFA
0501: ITEPYASLVL IWKQEELLCT TIQSTEEDRR ANFVDKLLEE DSFSLTTSSS SFENSLPLVD SYVKDKDDLG VVKSNNRAKR DSYIEAECLS LQRKQENKKR
0601: TQKYKDMLKT RTALPISEVK NGILQHLKEK DVLVVCGETG SGKTTQVPQF ILDDMIDSGH GGYCNIICTQ PRRIAAISVA QRVADERCES SPGLDDSLVG
0701: YQVRLESARS DKTRLLFCTT GILLRKLAGD RTLNDVTHII VDEVHERSLL GDFLLIILKS LIEKQSCDNT SRKLKVILMS ATVDADLFSR YFGHCPVITA
0801: QGRTHPVTTH FLEEIYESIN YLLAPDSPAA LRSDTSIKDK LGSVNDRRGK KNLVLAGWGD DYLLSEDCLN PFYVSSNYNS YSDQTQQNLK RLNEDRIDYE
0901: LLEELICHID DTCEEGAILI FLPGVAEIYM LLDMLAASYR FRGPAADWLL PLHSSIASSE QRKVFLRPPK GLRKVIAATN IAETSITIDD VVYVIDSGKH
1001: KENRYNPQKK LSSMVEDWIS QANARQRTGR AGRVKPGICF SLYTRYRFEK LMRPYQVPEM LRMPLVELCL QIKLLGLGHI KPFLSRALEP PSEGAMTSAI
1101: SLLHEVGAVE GDEELTPLGH HLAKLPVDVL IGKMLLYGGI FGCLSPILSI AAFLSYKSPF IYPKDEKQNV DRVKLALLSD NGVSSSDLNN NDRQSDHLLM
1201: MVAYDKWVKI LQERGMKAAQ RFCESKFLSS SVMRMIRDMR VQFGTLLADI GLINLPKTGE FSGRKKENLD VWFSDPTQPF NMYSQQPEVV KAILCAGLYP
1301: NIAANDKGIT ETTFNSLTKQ GNQTKSYSAW YDGRREVHIH PSSINSNFKA FQNPFLVFLE KVETNKVYLR DTTIVSPFSI LLFGGSINVH HQSGSVTIDG
1401: WLKVAAPAQT AVLFKELRLT LHSILKDLIR KPEKSGIVHN EVVKSMVHLL IEEGKPQHK
Arabidopsis Description
DExH-box ATP-dependent RNA helicase DExH7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I9Q5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.