Factsheet for HORVU7Hr1G032080.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G156700.1	Wheat	plastid	85.84	98.6
TraesCS7D01G157100.1	Wheat	plastid	85.71	98.46
TraesCS7B01G060800.1	Wheat	plastid	85.35	98.04
Os06t0192500-02	Rice	mitochondrion	46.28	92.89
KXG22666	Sorghum	nucleus	77.41	89.93
Zm00001d011963_P002	Maize	plasma membrane	76.92	87.38
KRH70930	Soybean	nucleus	61.78	71.77
KRH75071	Soybean	nucleus	61.54	71.49
VIT_01s0137g00640.t01	Wine grape	nucleus	62.15	70.11
PGSC0003DMT400009842	Potato	mitochondrion	31.14	67.64
Solyc09g008120.2.1	Tomato	nucleus	57.88	66.67
AT1G26370.1	Thale cress	plastid	55.92	63.88
CDY36075	Canola	nucleus	52.5	63.8
Bra011023.1-P	Field mustard	nucleus	53.6	63.72
CDX85017	Canola	cytosol, plastid	56.04	63.57
CDY16154	Canola	nucleus, plastid	55.92	63.35
CDY32702	Canola	nucleus	52.99	62.72
CDY34567	Canola	nucleus	50.67	62.59
CDY02818	Canola	nucleus	50.67	62.5
Bra024720.1-P	Field mustard	nucleus	55.56	61.82
GSMUA_Achr5P05110_001	Banana	nucleus	66.06	53.25
HORVU4Hr1G052730.3	Barley	cytosol	35.41	40.22
HORVU3Hr1G028550.17	Barley	cytosol	32.72	38.45
HORVU1Hr1G056370.1	Barley	nucleus	40.78	31.42
HORVU1Hr1G056400.1	Barley	nucleus	40.78	31.36
HORVU4Hr1G088270.17	Barley	mitochondrion	39.44	29.91
HORVU0Hr1G007860.1	Barley	nucleus	40.66	26.81
HORVU2Hr1G047870.2	Barley	nucleus	36.39	23.59
HORVU1Hr1G039880.1	Barley	nucleus	26.5	22.96
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	26.13	18.61
HORVU3Hr1G002800.8	Barley	mitochondrion	26.5	17.4
HORVU0Hr1G039590.6	Barley	nucleus	26.74	17.02
HORVU3Hr1G074660.7	Barley	plastid	24.05	15.46
HORVU5Hr1G019730.1	Barley	nucleus, plastid	25.4	12.18
HORVU2Hr1G030040.17	Barley	nucleus	24.91	11.18

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	UniProt:A0A287VYG0	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0043484	EnsemblPlantsGene:HORVU7Hr1G032080
EnsemblPlants:HORVU7Hr1G032080.3	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI000B47E970	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:65639396..65647425

Molecular Weight (calculated)

90380.7 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.304

Length

819 amino acids

Sequence
(BLAST)

001: VSLAHSCALV PPPPVAVSSP FPSPRRNHLR PLTPPPAFSA RSTGGSFSSP RVGGVPPWRR SSDQGPPHLP PPAHSSSKAR AASRGPTQAP SPSPAQKQIP
101: ASQHRAPAVA SFRAWGSAPA PEMPSFSSGA SPQKQQHNAR RKQLIRQQRK SLPIASVEKR LVDEVRKNDT LIVVGETGSG KTTQLPQFLY DGGFCQDGKV
201: IGITQPRRVA AVTVAKRVAE ECNDQLGRKV GYSIRFDDST SNATRIKYMT DGLLLREALL DPLLSKYSVV IVDEAHERTV HTDVLLGLLK KVQHSRSLHA
301: NKNGKILSDK QDHSQVSTLK ACQGIKTAPL KLIIMSASLD AKCFSDYFGG AKAVHIQGRQ YPVDTLYTYQ PESDYLDATL VTIFQIHLEE GPGDILAFLT
401: GQEEIESLER LIQERARQLP ADSSKIWITP IYSSLPSEQQ MNAFKPAPSG ARKVVLATNI AETSVTIPGI KYVIDPGMVK ARAYNPVTGM ESLIIIPVSK
501: AQALQRSGRA GREGPGKCFR LFQECEFDKL AESTIPEIKR CNLANVVLQL KALGIDDIIG FDFMEKPSRT SILKSLEQLI LLGALTDDYK LSDPVGKQMA
601: RLPLDPMYSK ALIVSSEFKC LEEMLIVVSM LSVESIFFTP REKLEEARAA RKSFESSEGD HITLVNVYRA AAECLEKSKN ANAKEKTMEK ALNRWCFENF
701: INYRSLRHAR DVHSQIQGHV QQMGLNLSSC GDDMVQFRRC LTAAFFLNAA MRQPDGSFRA LATGQSVQMH PSSVLFRTKP DCVIFNELVR TTQNYVKNLT
801: RIDPLWLAEL APQYYATED

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.